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Objective: The advancement of neuroimaging and genetic research has revealed the presence of morphological abnormalities and numerous risk genes, along with their associations. We aimed to estimate magnetic resonance imaging-derived cortical thickness across multiple brain regions. Methods: The cortical thickness of 129 schizophrenia patients, 42 of their unaffected siblings, and 112 healthy controls was measured and the candidate genes were sequenced. Comparisons were made of cortical thickness (including 68 regions of the Desikan-Killiany Atlas) and genetic variants (in 108 risk genes for schizophrenia) among the three groups, and correlation analyses were performed regarding cortical thickness, clinical symptoms, cognitive tests (such as the N-back task and the logical memory test), and genetic variants. Results: Schizophrenia patients had significantly thinner bilateral frontal, temporal, and parietal gyri than healthy controls and unaffected siblings. Association analyses in target genes showed that four single nucleotide variants (SNVs) were significantly associated with schizophrenia, including thioredoxin-related transmembrane protein 2-catenin, cadherin-associated protein, delta 1 (SNV20673) (positive false discovery rate [PFDR] = 0.008) and centromere protein M (rs35542507, rs41277477, rs73165153) (PFDR = 0.030). Additionally, cortical thickness in the right pars triangularis was lower in carriers of the SNV20673 variant than in non-carriers (PFDR = 0.048). Finally, a positive correlation was found between right pars triangularis cortical thickness and logical memory in schizophrenia patients (r = 0.199, p = 0.032). Conclusions: This study identified regional morphological abnormalities in schizophrenia, including the right homologue of Broca’s area, which was associated with a risk variant that affected delta-1 catenin and logical memory. These findings suggest a potential association between candidate gene loci, cortical thickness, and schizophrenia. Objective associations imagingderived imaging derived Methods 12 4 siblings 11 sequenced 6 DesikanKilliany Desikan Killiany Atlas 10 groups symptoms such Nback N back test, test , test) Results frontal temporal SNVs (SNVs thioredoxinrelated thioredoxin related 2catenin, 2catenin 2 catenin, 2-catenin cadherinassociated cadherin SNV (SNV20673 PFDR [PFDR 0.008 0008 0 008 rs35542507, rs35542507 rs (rs35542507 rs41277477 rs73165153 0.030. 0030 0.030 . 030 0.030) Additionally SNV2067 noncarriers non 0.048. 0048 0.048 048 0.048) Finally r 0199 199 0.199 0.032. 0032 0.032 032 0.032) Conclusions Brocas Broca s area delta1 delta- loci (SNV2067 0.00 000 00 rs3554250 (rs3554250 rs4127747 rs7316515 003 0.03 03 SNV206 004 0.04 04 019 19 0.19 (SNV206 0.0 rs355425 (rs355425 rs412774 rs731651 SNV20 01 0.1 (SNV20 0. rs35542 (rs35542 rs41277 rs73165 SNV2 (SNV2 rs3554 (rs3554 rs4127 rs7316 (SNV rs355 (rs355 rs412 rs731 rs35 (rs35 rs41 rs73 rs3 (rs3 rs4 rs7 (rs