Abstract Spondias mombin L. (Anacardiaceae) is an arboreal and allogamous fruit tree native from southern Mexico to southeastern Brazil, with great potential for economic exploitation. This study aimed to evaluate the structure and genomic diversity of yellow mombin accessions collected in nine locations in Brazil using Single Nucleotide Polymorphisms (SNP) markers. Significant genetic structure was observed in the discriminant analysis of principal components (DAPC) and dendrogram construction, in accordance with our hypotheses. The Mantel test identified a highly positive and significant correlation between geographic and genetic distances. The locations from the Amazon biome presented higher genetic diversity values when compared to those from the Atlantic Forest and Cerrado, which is expected considering the higher vulnerability of these biomes. However, although presenting greater genetic diversity, the Amazon biome showed positive inbreeding coefficients (F IS ) in three of the four locations, ranging from 0.0855 to 0.2421, indicating a potential risk of genetic erosion, possibly related to the increased degradation of this biome in recent decades. The results obtained contribute to the understanding of the distribution of genetic variation and conservation status of yellow mombin in Brazil. They could also be used as a subsidy for developing conservation strategies and the genetic improvement of this species. L Anacardiaceae (Anacardiaceae exploitation SNP (SNP markers DAPC (DAPC construction hypotheses distances Cerrado biomes However F 00855 0 0855 0.085 02421 2421 0.2421 erosion decades species 0085 085 0.08 0242 242 0.242 008 08 0.0 024 24 0.24 00 0. 02 2 0.2

ABSTRACT. Jangada is a municipality in the Baixada Cuiabana region, State of Mato Grosso, Brazil. This study aimed to evaluate the collection of local cassava conserved by four traditional communities of Jangada in terms of ethnobotanical/socioeconomic and genetic aspects. Socioeconomic and ethnobotanical analyses were carried out with 40 farmers using qualitative techniques and descriptive statistics. Seven microsatellite markers were used for genetic analysis. A total of 182 cassava citations were verified, 31 of which were different. The Broto Branco variety was the most frequent (94.3%), followed by Vermelha Gaiadeira and Liberata (82.9 and 77.1%, respectively). The calculated median age for farmers was 56 years. Spearman’s coefficient indicated a positive correlation between the increase in farmer’s age and the number of cultivated local varieties. Few varieties are planted by many farmers, and most are planted by few farmers. High genetic diversity was observed, and most of the variability occurred within communities (88%). Two groups were formed in the cluster analysis, with two communities in each group. The propagule circulation network helped to understand the genetic similarity of communities with the closest geographic location. Cassava cultivation plays an important role in the studied communities, which maintain a high ethnobotanical and genetic diversity and relevant knowledge about the cultivated varieties. ABSTRACT region Grosso Brazil ethnobotanicalsocioeconomic socioeconomic aspects 4 statistics analysis 18 verified 3 different 94.3%, 943 94.3% , 94 (94.3%) 82.9 829 82 9 (82. 771 77 1 77.1% respectively. respectively . respectively) 5 years Spearmans Spearman s farmer observed 88%. 88 88% (88%) group location 94.3 (94.3% 82. 8 (82 7 77.1 (88% 94. (94.3 (8 77. (88 (94. ( (94 (9

Abstract The expansion of cowpea (Vigna unguiculata (L.) Walp.) crop has created new demands for its breeding programs. Knowledge of its genetic base is fundamental for choosing progenitors when conducting crosses. This study aimed to estimate the genetic base of Brazilian cowpea cultivars released between 1960 and 2022, in addition to identifying the origin of their cytoplasmic genes. Seventy-three cultivars were released in this period; however, only 41 had information about their original crosses. The ancestors CNC0434, Pitiúba and Seridó were used more frequently in crosses. They have also contributed with the highest frequency to the cultivars’ cytoplasmic genes. Therefore, although we found that between 2005 and 2022 there was a 30.95% increase in the contribution of different genotypes, we conclude that the genetic base of cowpea is narrow, and it is necessary to avoid crosses involving CNC0434, Pitiúba and Seridó in future breeding programs of this legume in Brazil. Vigna L. L (L. Walp. Walp 196 genes Seventythree Seventy three period however 4 CNC0434 CNC Therefore 200 202 3095 30 95 30.95 genotypes narrow Brazil (L 19 CNC043 20 309 3 9 30.9 1 CNC04 2 30. CNC0

RESUMO: O urucum (Bixa orellana L.) é uma espécie arbórea domesticada na Amazônia a partir de seu ancestral selvagem (B. orellana var. urucurana). Das suas sementes ortodoxas, é extraído a bixina, corante bastante utilizado na alimentação. Este estudo teve como objetivos avaliar métodos de superação da dormência e determinar o potencial de germinação de sementes, comparando populações domesticadas e selvagens. Sementes de duas populações domesticadas e duas famílias de uma população selvagem, armazenadas por dois anos após a coleta, foram submetidas a cinco tratamentos de superação da dormência: T1 - controle; T2 - escarificação mecânica (com lixa); T3 - escarificação mecânica (com lixa) + imersão em água a 36 ºC durante a noite (12 horas); T4 - imersão em água à temperatura ambiente (23 ºC, em média) por 24 h; T5 - imersão em ácido sulfúrico concentrado (95 - 98%) por 15 min + água corrente por 3 min. Foram observadas diferenças altamente significativas (P < 0,001) no potencial de germinação de sementes entre domesticadas e selvagens, e entre os tratamentos testados. As populações domesticadas apresentaram maior porcentagem de germinação (10 - 58%) em comparação com a de urucum selvagem (0 - 44%). Os melhores tratamentos foram os realizados com escarificação mecânica. Considerando sua simplicidade, concluímos que a escarificação mecânica com lixa representa boa alternativa para superar a dormência do urucum.

ABSTRACT: Annatto (Bixa orellana L.) is an arboreal species domesticated in Amazonia from its wild ancestor (B. orellana var. urucurana). Bixin extracted from its orthodox seeds is a natural dye widely used in the food industry. This study evaluated methods to overcome seed dormancy and determine the germination potential, comparing domesticated and wild annatto populations. Seeds from two domesticated-type populations and two families of a wild-type population, stored for two years after field collection, were submitted to five treatments to overcome dormancy: T1 - control; T2 - mechanical scarification (with sandpaper); T3 - mechanical scarification (with sandpaper) + immersion in water at 36 ºC overnight (12 hours); T4 - immersion in water at room temperature (23 ºC, on average) for 24 h; T5 - immersion in concentrated sulfuric acid (95 - 98%) for 15 min + running water for 3 min. Highly significant differences (P < 0.001) were observed in the germination percentage of annatto seeds between wild and domesticated types, and among the treatments tested. Domesticated types showed higher germination percentage (10 - 58%) over all treatments when compared to the wild type (0 - 44%). The best treatments were those performed with mechanical scarification. Given the simplicity, we concluded that mechanical scarification with sandpaper is a good alternative to overcome dormancy of annatto seeds.

ABSTRACT Bacurizeiro (Platonia insignis) is a fruit of the Amazon that, due to anthropic actions, has been suffering serious damage to its genetic diversity. We analyzed the genetic diversity and structure of seven bacurizeiro populations distributed among four Brazilian states and two biomes, the Amazon and Cerrado, based on eight nuclear (ncSSR) and three chloroplast (cpSSR) microsatellite markers. Higher heterozygosity values were found for the Northern populations of Japurá and Marapanim, and the Northeast population of Chapadinha when using ncSSR. Higher diversity indices were also observed for these populations with cpSSR, although higher haplotypic diversity parameters were detected for the two Northern populations. Genetic structure analysis showed the formation of two well defined groups: I - populations from Maranhão and Piauí (Cerrado) and II - populations from Amazonas and Pará (Amazon). Positive and significant correlations were identified between genetic and geographical distances for both ncSSR (r = 0.09; p = 0.0010) and cpSSR (r = 0.11; p = 0.0008), in agreement with the genetic structure analysis. The high genetic structure among populations probably reflects the divergent natural and human selection pressures to which bacurizeiros are subjected in both the Amazon and Cerrado biomes, with higher diversity maintained in the Amazon populations.

RESUMO Os badnavírus (família Caulimoviridae) possuem genoma de dsDNA semicircular encapsidado em partículas baciliformes. Dioscorea bacilliform virus (DBV) é um importante Badnavirus infectando várias espécies de Dioscorea (inhame) no hemisfério sul. No presente estudo, 235 amostras foliares de inhame foram coletadas em diferentes bancos de germoplasma mantidos pela Escola Superior de Agricultura Luiz (ESALQ/USP), Universidade Federal de Viçosa (UFV) e Universidade Federal do Recôncavo Baiano (UFRB). A incidência média de badnavírus nas amostras avaliadas foi de 75,3%. As análises moleculares e filogenéticas, realizadas a partir de 42 sequências nucleotídicas, da região da RT/RNaseH de badnavírus, revelaram a ocorrência do Dioscorea bacilliform AL virus (DBALV) e Dioscorea bacilliform SN virus (DBSNV) em diferentes espécies de inhame. Até o momento, somente o DBALV havia sido relatado em inhame no Brasil, estando restrito à região Nordeste. Portanto, este é o primeiro relato do DBSNV infectando a cultura do inhame, no país. Além das espécies espissomais, também foram detectadas sequências endógenas, com porcentagem de identidade de nucleotídeos variando entre 89% e 100% com endogenous Dioscorea bacilliform virus (eDBV), pertencentes aos grupos 9 e 12. Os resultados obtidos corroboram com a hipótese de que o DBALV e o DBSNV estão presentes em materiais propagativos de inhame e amplamente disseminados no Brasil.

ABSTRACT Badnaviruses (family Caulimoviridae) have semicircular dsDNA genomes encapsidated into bacilliform particles. Dioscorea bacilliform virus (DBV) is an important Badnavirus infecting several species of Dioscorea (yam) in the southern hemisphere. In this study, 235 yam leaf samples were collected from different germplasm banks maintained by “Luiz de Queiroz” College of Agriculture (ESALQ/USP), Federal University of Viçosa (UFV) and Federal University of Recôncavo da Bahia (UFRB). The average incidence of badnavirus in the evaluated samples was 75.3%. Molecular and phylogenetic analyses, carried out from 42 nucleotide sequences, of the badnavirus RT/RNaseH region, revealed the occurrence of Dioscorea bacilliform AL virus (DBALV) and Dioscorea bacilliform SN virus (DBSNV) in different yam species. So far, only DBALV has been reported in yams in Brazil, being restricted to the Northeast region. Therefore, this is the first report of DBSNV infecting yam crop in the country. In addition to the episomal species, endogenous sequences were detected, and the percentage of nucleotide identity varied between 89% and 100% with endogenous Dioscorea bacilliform virus (eDBV), belonging to groups 9 and 12. The obtained results corroborate the hypothesis that DBALV and DBSNV are present in yam propagating materials and are widely disseminated in Brazil.

Abstract Annatto (Bixa orellana) is a tropical crop native to the Americas with Amazonia as the likely center of origin of domestication. Annatto is important because it produces the dye bixin, which is widely used in the pharmaceutical, food, cosmetic and textile industries. A total of 32 microsatellite loci were isolated from a microsatellite-enriched genomic library, of which 12 polymorphic loci were used to characterize four populations of B. orellana and B. orellana var. urucurana, the wild relative. Higher genetic diversity estimates were detected for the wild populations when compared to the cultivated populations. Also, higher apparent outcrossing rates were found for the two wild than the cultivated populations. These results indicate a mixed mating system for the species. All markers described herein have potential to be used in further studies evaluating the genetic diversity, population dynamics, domestication, breeding, and conservation genetics of annatto.

RESUMO. O objetivo desta pesquisa foi o de avaliar a diversidade genética entre plantas nativas e indivíduos de genealogia desconhecida de C. walkeriana, bem como C. loddigesii e C. nobilior, e também avançar na solução do dilema da origem do clone “Orchidglade” de C. walkeriana. Oito locos microssatélites foram utilizados para avaliar a diversidade genética entre indivíduos de C. walkeriana. Os marcadores microssatélites não foram eficientes na determinação da diversidade genética entre os grupos C. walkeriana (nativas e melhoradas). A dificuldade em determinar a distância genética entre os genótipos diferentes pode ser devida a um sistema complexo de reprodução das espécies e devido a uma fraca barreira reprodutiva facilitando o desenvolvimento de híbridos. Nossa análise revelou menores distâncias genéticas entre os clones Orchidglade, “Equilab”, “Kenny” e “Pedentive” e as espécies C. loddigesii e C. nobilior. As C. walkeriana nativas se mostraram geneticamente mais distantes das espécies de C. loddigesii e C. nobilior.

ABSTRACT. The aim of this study was to evaluate the genetic diversity among native plants and some individuals obtained from crosses with unknown genealogy of C. walkeriana as well as C. loddigesii and C. nobilior and to advance towards solving the question of the genetic purity of the “Orchidglade” clone. Eight microsatellite loci were used to evaluate the genetic diversity between individuals of C. walkeriana. Microsatellites were not efficient in determining the genetic diversity between C. walkeriana groups (native and improved). The difficulty in determining the genetic distance between the different genotypes can be attributed to the complex mating system of the species and to a weak genetic barrier that facilitates the development of hybrids. Our analysis revealed smaller genetic distances between the “Orchidglade”, “Equilab”, “Kenny” and “Pedentive” clones and the species C. loddigesii and C. nobilior. Native C. walkeriana plants were genetically more distant from the C. loddigesii and C. nobilior species.

Abstract Studies of genetic diversity and structure are key elements in designing effective in situ and ex situ management plans, especially for species experiencing forest fragmentation. To investigate the level of genetic diversity in populations of Trichocentrum pumilum, eight polymorphic microsatellite loci were developed and used for genotyping 96 specimens from four disturbed populations. Low genetic diversity within populations was found (average number of alleles per locus ranging from 3.75 to 4.25, observed and expected heterozygosities from 0.238 to 0.333 and from 0.450 to 0.482, respectively). The fixation index () ranged from 0.35 to 0.47, with significant values for all populations. No genotypic disequilibrium was detected. A mixed breeding system was found through an apparent outcrossing rate estimate. Our results suggest that these microsatellite loci are suitable for genetic studies of this species, showing low within population genetic diversity and moderate structure for T. pumilum populations.

RESUMO: Psidium guineense Sw., conhecida popularmente como araçá, é uma fruteira pertencente à família Myrtaceae que tem ampla distribuição geográfica. Nos Estados do Nordeste Brasileiro ela ocorre principalmente na faixa litorânea e Zona da Mata. O fruto do araçazeiro tem sabor que lembra o da goiaba, ligeiramente mais ácido e de perfume mais acentuado, e sua exploração é feita de modo extrativista. As informações sobre esta espécie são escassas, o que dificulta a conservação dos recursos genéticos e sua exploração econômica. Neste trabalho foram estudadas a diversidade e estrutura genética de quatro populações de araçá, tendo sido avaliados um total de 114 indivíduos por meio de 18 loci isoenzimáticos que revelaram 28 alelos. A porcentagem de locipolimórficos () e o número médio de alelos por loco () nas populações foram 0,5 e 1,5, respectivamente. A heterozigosidade esperada (), que corresponde à diversidade gênica, variou entre 0,22 e 0,23, valores altos, principalmenteconsiderando-se que isoenzimas acessam a porção funcional do genoma. O índice médio de diferenciação () entre as populações foi de 0,015, portanto, as populações basicamente não diferem entre os locais amostrados. O índice de fixação () variou de -0,549 a -0,794 indicando ausência de endogamia e excesso de heterozigosidade nas populações. O fluxo gênico (Nm) estimado para os pares de populações variou de 3,23 a 20,77, valores que corroboram com a ausência de diferenciação observada entre estas.

ABSTRAT: Psidium guineense Sw, popularly known as araçá, is a fruit tree there is widely distributed in Brazil and belongs to the Myrtaceae family. In northeastern Brazil, araçá occurs along coast and in the Zona da Mata; its fruit looks like guava but is more acidic and has a stronger smell. There is a little information about this species, which increases the difficulty of conserving its genetic resources and exploiting araçá as an economic resource. The objective of this research was the evaluation of the genetic diversity and genetic structure of P. guineense from Pernambuco's Zona da Mata. One hundred and fourteen individuals and 18 isozyme loci were evaluated, showing 28 alleles. The percentage of polymorphic loci () and the average number of alleles per locus () were 0.5 and 1.5, respectively, in this population. The expected heterozygosity, which corresponds to the genetic diversity, ranged from 0.22 to 0.23, a high value when considering that isozymes mark access from the functional genome. The differentiation index among the population was () = 0.015; therefore, the populations were not different among the sampled places. The inbreeding values () ranged from -0.549 to -0.794, indicating an absence of inbreeding and a greater-than-expected heterozygosity in all the studied populations. The estimated gene flow (Nm) for a pair of this population ranged from 3.23 to 20.77, sufficient to avoid genetic differentiation among the population and in accordance with the values of genetic divergence found in this study.

Astrocaryum jauari é uma palmeira não domesticada e explorada de forma extrativista. O objetivo dotrabalho foi investigar a organização da diversidade genética e estrutura detrês populações de A. jauari . Este estudo foi realizado no estado doAmazonas, entre as cidades de Coari e Manaus. Nove microssatélites foram usadospara as análises genéticas. Foi encontrada alta variabilidade genética com um númeromédio de alelos por loco variando 3, 9 a 4, 4. As heterozigosidades observadasmédias, variando de 0, 71 a 0, 78, foram maiores que os valores deheterozigosidade esperada. Não foi detectada estrutura genética espacial e foiobservado apenas um agrupamento. Os resultados indicam uma possível estratégiade dispersão e sugerem que a conservação desta espécie deve ser realizadaprincipalmente nas populações encontradas no final do rio principal (Solimões), pois contêm a maior parte do material genético proveniente das cabeceiras dosafluentes do presente rio.

Astrocaryum jauari is a non-domesticated palm that is exploited by poachers. Our objective was to investigate the organization of the geneticdiversity and structure of three A. jauari populations. The study was carried out in the state of Amazonas, between the municipalities of Coari and Manaus. Nine microsatellite loci were used for the genetic analyses. High genetic variation was found, with a mean number of alleles per locus varying from 3.9 to 4.4. The average observed heterozygosity, varying from 0.71 to 0.78, was higher than expected. No spatial genetic structure was detected, since only one cluster was observed. Our results indicate a possible dispersion strategy and suggest that conservation measures of this species should focus mainly on the populations found at the end of the main river (Solimões) where most of the plant material originating from the headwaters of the tributaries of this river is concentrated.

A teca (Tectona grandis) é uma das principais espécies de madeira do mundo, com alto valor econômico, famosa por sua beleza, resistência e durabilidade. Este estudo teve como objetivo caracterizar a diversidade genética de genótipos de teca usados em plantios brasileiros. Foram utilizados nove primers microssatélites para avaliar 60 genótipos de teca, incluindo 33 genótipos de sementes de plantações e 14 clones de Cáceres, Município de Mato Grosso, Brasil, e 13 clones oriundos de Honduras, Malásia, Índia, Indonésia, Costa do Marfim e Ilhas Salomão. Dois grupos genotípicos foram detectados por meio da análise Bayesiana: 80% dos genótipos foram alocados no grupo 1, representado por materiais de Cáceres e um da Malásia; e 20% alocados no grupo 2, sendo este composto por clones da Índia, Ilhas Salomão, Malásia e Honduras e clones da Costa do Marfim. De acordo com a análise de variância (AMOVA), a maior parte da variabilidade genética (73%) está concentrada dentro de grupos. Os parâmetros genéticos foram estimados para os dois grupos obtidos na análise do Structure. Foi detectada diversidade genética moderada, com 4,1 alelos por loco, em média, e heterozigosidade média observada de 0,329, sendo menor que a esperada (He = 0,492). O grupo 1 apresentou os menores valores para esses parâmetros. Sugestões foram feitas com relação à identificação de genótipos contrastantes para serem utilizados como parentais em programas de melhoramento.

Teak (Tectona grandis) is one of the main timber species in the world with high economic value, famous for its beauty, strength and durability. The objective of this work was to characterize the genetic diversity of teak genotypes used in Brazilian plantations. Nine microsatellite primers were used to assess 60 teak genotypes, including 33 genotypes from seeds of plantations and 14 clones from Cáceres municipality, Mato Grosso State, Brazil, and 13 clones from Honduras, Malaysia, India, Indonesia, Ivory Coast and Solomon Islands. Two groups of genotypes were detected using the Bayesian Structure analysis: 80% were placed in group 1, represented by genotypes from Cáceres and one from Malaysia, and 20% allocated in group 2, composed of clones from India, Solomon Islands, Malaysia and Honduras and the clones from the Ivory Coast. Most of the genetic variability (73%) was concentrated within groups according to AMOVA analysis. Genetic parameters were estimated for the two groups obtained in the analysis of Structure. Moderate genetic diversity was found, with 4.1 alleles per locus, on average, and an average heterozygosity of 0.329, which was lower than the expected heterozygosity (He = 0.492). Group 1 showed the lowest values for these parameters. Suggestions were made concerning the identification of contrasting genotypes to be used as parents in breeding programs.

O objetivo deste trabalho foi caracterizar, morfológica e molecularmente, a diversidade genética de acessos de mandioca de diferentes regiões do Brasil. Realizou-se a análise descritiva de 12 características morfológicas em 419 acessos. Os dados foram transformados em dados binários para análise de agrupamento e análise de variância molecular. Observou-se maior proporção (71%) de cor branca ou creme do córtex da raiz, enquanto as cores da polpa foram predominantemente branca (49%) e creme (42%). Quatro grupos de acessos foram classificados pela análise de agrupamento, mas não foram agrupados de acordo com sua origem, o que indica que a diversidade não está estruturada no espaço. A maior parte da variação ocorreu dentro das populações (95,6%). Sessenta genótipos também foram avaliados com o uso de 14 marcadores microssatélites polimórficos. Os resultados moleculares corroboraram os morfológicos e mostraram a mesma distribuição aleatória dos genótipos, com ausência de agrupamento quanto ao local de origem. Os índices de diversidade foram elevados para cada região e a maior parte da diversidade foi observada dentro de regiões, com: número médio de alelos por loco de 3,530; heterozigosidade média observada de 0,499 e esperada de 0,642; e índice de Shannon de 1,03. A ausência de estrutura espacial entre os genótipos de mandioca de acordo com suas origens mostra a influência antrópica na distribuição e movimentação de germoplasma, tanto entre como dentro de regiões.

The objective of this work was to characterize morphologically and molecularly the genetic diversity of cassava accessions, collected from different regions in Brazil. A descriptive analysis was made for 12 morphological traits in 419 accessions. Data was transformed into binary data for cluster analysis and analysis of molecular variance. A higher proportion of white or cream (71%) root cortex color was found, while flesh colors were predominantly white (49%) and cream (42%). Four accession groups were classified by the cluster analysis, but they were not grouped according to their origin, which indicates that diversity is not structured in space. The variation was greater within regions (95.6%). Sixty genotypes were also evaluated using 14 polymorphic microsatellite markers. Molecular results corroborated the morphological ones, showing the same random distribution of genotypes, with no grouping according to origin. Diversity indices were high for each region, and a greater diversity was found within regions, with: a mean number of alleles per locus of 3.530; observed and expected heterozygosity of 0.499 and 0.642, respectively; and Shannon index of 1.03. The absence of spatial structure among cassava genotypes according to their origins shows the anthropic influence in the distribution and movement of germplasm, both within and among regions.

El estudio de la estructura genética de poblaciones de plantas silvestres es esencial para su manejo y conservación. Varios marcadores de ADN e isoenzimas se han utilizado en este tipo de análisis. Con el fin de proporcionar una mejor comprensión de los resultados obtenidos y saber que marcador codominante elegir para futuros estudios en poblaciones naturales de Oryza glumaepatula, este trabajo busco evaluar y comparar dos marcadores de ADN, isoenzimas y microsatélites, en la diversidad y estructura genética de 13 poblaciones, destacando las similitudes y divergencias de cada marcador, así como la importancia relativa de los resultados en genética de poblaciones y conservación. Para los SSR, ocho loci SSR fueron evaluados, y los fragmentos se visualizaron utilizando el procedimiento de coloración con plata. Los análisis de isoenzimas se realizaron en geles de poliacrilamida, en los seis loci enzimáticos. Los loci SSR mostraron mayores niveles de diversidad genética que los loci isoenzimáticos, en promedio. La diferenciación genética entre los loci SSR (R ST=0.631, equivalente a F ST=0.533) fue inferior a la obtenida con las isoenzimas (F ST=0.772). Ambos marcadores mostraron alta desviación del equilibrio de Hardy-Weinberg (F IS=0.744 y 0.899, respectivamente, para SSR e isoenzimas). La tasa media aparente de cruzamiento para SSR ( =0.14) fue mayor que la obtenida con isoenzimas ( =0.043), aunque ambos marcadores detectaron niveles más bajos en la tasa de fecundación cruzada para la Amazonia, en comparación con la región del Pantanal. La estimación de número de migrantes también fue mayor para los SSR (Nm=0.219) que en isoenzimas (Nm=0.074). No se obtuvo ninguna correlación entre las distancias genéticas y geográficas para los SSR, y para las isoenzimas se obtuvo una correlación positiva entre las distancias genéticas y geográficas. Llegamos a la conclusión de que estos marcadores son divergentes en la detección de los parámetros de la diversidad genética en O. glumaepatula y que los microsatélites son más eficientes para detectar la información a nivel intra-poblacional, mientras que las isoenzimas son más potentes para detectar la diversidad entre poblaciones.

The study of the genetic structure of wild plant populations is essential for their management and conservation. Several DNA markers have been used in such studies, as well as isozyme markers. In order to provide a better comprehension of the results obtained and a comparison between markers which will help choose tools for future studies in natural populations of Oryza glumaepatula, a predominantly autogamous species, this study used both isozymes and microsatellites to assess the genetic diversity and genetic structure of 13 populations, pointing to similarities and divergences of each marker, and evaluating the relative importance of the results for studies of population genetics and conservation. A bulk sample for each population was obtained, by sampling two to three seeds of each plant, up to a set of 50 seeds. Amplified products of eight SSR loci were electrophoresed on non-denaturing polyacrylamide gels, and the fragments were visualized using silver staining procedure. Isozyme analyses were conducted in polyacrylamide gels, under a discontinuous system, using six enzymatic loci. SSR loci showed higher mean levels of genetic diversity (A=2.83, p=0.71, A P=3.17, Ho=0.081, He=0.351) than isozyme loci (A=1.20, p=0.20, A P=1.38, Ho=0.006, He=0.056). Interpopulation genetic differentiation detected by SSR loci (R ST=0.631, equivalent to F ST=0.533) was lower than that obtained with isozymes (F ST=0.772). However, both markers showed high deviation from Hardy-Weinberg expectations (F IS=0.744 and 0.899, respectively for SSR and isozymes). The mean apparent outcrossing rate for SSR ( =0.14) was higher than that obtained using isozymes ( =0.043), although both markers detected lower levels of outcrossing in Amazonia compared to the Pantanal. The migrant number estimation was also higher for SSR (Nm=0.219) than isozymes (Nm=0.074), although a small number for both markers was expected due to the mode of reproduction of this species, defined as mixed with predominance of self fertilization. No correlation was obtained between genetic and geographic distances with SSR, but a positive correlation was found between genetic and geographic distances with isozymes. We conclude that these markers are divergent in detecting genetic diversity parameters in O. glumaepatula and that microsatellites are powerful for detecting information at the intra-population level, while isozymes are more powerful for inter-population diversity, since clustering of populations agreed with the expectations based on the geographic distribution of the populations using this marker

Este estudo teve como objetivo a análise genética de 36 acessos de inhame (Dioscorea alata) utilizando marcadores microssatélites. Dez acessos foram coletados em mercados locais de vários municípios no Brasil, oito foram obtidos no banco de germoplasma do Instituto Agronômico de Campinas (IAC), e dezoito foram coletados diretamente com os agricultores no estado de São Paulo. Um total de nove locos de microssatélites foram utilizados para amplificação. Alto polimorfismo foi encontrado entre os locos, verificado pelos valores de PIC elevados (0,57-0,77) e altos índices de heterogosidade esperada e Shannon-Wiener (0,69 e 1,29 em média, respectivamente). Os acessos foram classificados em dois grupos pela análise de agrupamento. O primeiro grupo consiste principalmente de acessos obtidos da coleção do IAC, incluindo um acesso comercial obtido num mercado na cidade de Cuiabá, estado de Mato Grosso. O segundo grupo classificou os acessos coletados diretamente dos agricultores, incluindo um importante acesso proveniente de Porto Rico, denominado 'Florida', a cultivar mais plantada no Brasil. Este grupo incluiu também os acessos obtidos em mercados de vários municípios do estado de São Paulo, além de outros acessos da coleção do IAC. Várias duplicatas foram identificadas neste estudo, incluindo acessos obtidos junto aos dois agricultores de Mogi Guaçu e Mogi Mirim, em São Paulo. Entretanto, parte desses acessos foi alocada em diferentes sub-grupos, dentro do segundo grupo. Os resultados sugerem a hipótese de diferentes origens para os acessos atualmente comercializados e cultivados no Brasil. Acessos similares obtidos de diferentes municípios mostrou a comercialização dos mesmos em locais diferentes.

This study aimed to fingerprint 36 water yam (Dioscorea alata) accessions using microsatellite markers. Ten accessions were collected in local markets from several municipalities in Brazil, eight were obtained from the 'Instituto Agronômico de Campinas' (IAC) germplasm collection and eighteen were collected directly from growers from São Paulo state. A total of nine microsatellite loci were used in the analysis. Loci revealed high polymorphism verified by elevated PIC values (0.57-0.77), and by high gene diversity and Shannon-Wiener indices (0.69 and 1.29 on average, respectively). The accessions were classified into two groups based on clustering analysis. One group contained mostly accessions from the IAC collection, including a commercial cultivar acquired in a market in the city of Cuiabá, Mato Grosso state. The second group was composed of most accessions, including those collected directly from growers and markets in São Paulo, a few accessions from the IAC collection, and an accession from Puerto Rico, named 'Florida', which is the most cultivated in Brazil. Several duplicates were identified in this study, including accessions obtained from two farmers in Mogi Guaçu and Mogi Mirim, São Paulo state. However, some of these accessions were allocated in different sub-groups, within this second group. Results suggested the hypothesis of different origins for accessions currently cultivated in Brazil. Similar accessions obtained from different municipalities revealed the commercialization of the same accessions at different locations.