BACKGROUND The high demand for adequate material for the gold standard reverse transcription real-time polymerase chain reaction (RT-qPCR)-based diagnosis imposed by the Coronavirus disease 2019 (COVID-19) pandemic, combined with the inherent contamination risks for healthcare workers during nasopharyngeal swab (NP) sample collection and the discomfort it causes patients, brought the need to identify alternative specimens suitable for the diagnosis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). OBJECTIVES The aim of this work was to compare saliva and gingival fluid swabs to NP swabs as specimens for RT-qPCR-based SARS-CoV-2 diagnosis. METHODS We compared gingival fluid swabs (n = 158) and saliva (n = 207) to the rayon-tipped NP swabs obtained from mild-symptomatic and asymptomatic subjects as specimens for RT-qPCR for SARS-CoV-2 detection. FINDINGS When compared to NP swabs, gingival fluid swabs had a concordance rate of 15.4% among positive samples, zero among inconclusive, and 100% among negative ones. For saliva samples, the concordance rate was 67.6% among positive samples, 42.9% among inconclusive, and 96.8% among negative ones. However, the concordance rate between saliva and NP swabs was higher (96.9%) within samples with lower cycle threshold (Ct) values (Ct > 10 ≤ 25). MAIN CONCLUSIONS Our data suggests that whereas gingival fluid swabs are not substitutes for NP swabs, saliva might be considered whenever NP swabs are not available or recommended.

ABSTRACT Introduction: In the current standard of care (SoC) RT-PCR method for COVID-19, the patient’s swab was extracted in viral transport media (VTM). For the PanbioTM COVID-19 Ag Rapid Test, the patient swab is flushed out in extraction buffer, of which a small fraction is used for testing, leaving more than half the sample unused. This study was designed to show that RT-PCR results from the residual sample of the PanbioTM COVID-19 Ag Rapid Test (called Novel RT-PCR) are not worse than the SoC RT-PCR result. Methods: The study was performed using (1) dilution series of five patient samples, and (2) 413 patient samples comparing SOC versus Novel RT-PCR results. Results: For the dilution series samples, all tested positive by both methods. The bias between Ct values of Novel RT-PCR and SoC RT-PCR did not exceed 3.00 Ct using primers N1 and N2. A total of 413 COVID symptomatic patients seeking COVID testing were tested, of which 89 patients tested positive and 324 tested negative with SoC RT-PCR. In 324 patients who tested negative with SoC RT-PCR, 323 tested negative with Novel RT-PCR, and one (1) tested positive. Out of 89 who tested positive with SoC RT-PCR, 80 tested positive with the Novel RT-PCR, and nine patients showed a negative test result. The Overall Percent Agreement for the 413 valid patient sample pairs was 97.5 [95% CI 97 to 98]. Conclusion: The study demonstrated that the performance of the Novel RT-PCR method is acceptable compared to the SoC RT-PCR method and can be a useful tool to perform RTPCR without the need for new swab collections.

Resumo Invasões biológicas vêm levando várias espécies à extinção, sendo projetado como o principal causador de mudanças na biodiversidade em lagos neste século. Entretanto, o conhecimento dos impactos sobre a ictiofauna Neotropical ao longo do tempo permanece bastante incipiente, especialmente quando se considera a diversidade funcional de comunidades nativas. Neste estudo, nós procuramos identificar os efeitos das espécies não nativas, especialmente os piscívoros não nativos Cichla kelberi and Pygocentrus nattereri, sobre a diversidade funcional da ictiofauna da Lagoa Carioca, bacia do médio rio Doce, Minas Gerais. Utilizando dados de ocorrência de oito anos entre 1983 e 2010, combinados a uma análise de atributos ecomorfológicos, observamos que a riqueza de espécies decaiu a 56%, enquanto a riqueza funcional é de apenas 27% da encontrada antes das introduções. Ou seja, mais do que espécies, a ictiofauna sofreu um declínio significativo na amplitude de atributos funcionais, o que pode levar a impactos severos em processos ecológicos neste sistema. Ao considerar todos os componentes da ictiofauna atual (espécies nativas e não nativas), as métricas de riqueza não sofreram alterações ao longo do tempo. Entretanto, mesmo mantendo os níveis de biodiversidade, espécies não nativas não são capazes de compensar totalmente as espécies nativas extintas em termos funcionais.

Abstract Biological invasions are leading several species to extinction and are projected as a main driver of biodiversity changes in lakes for this century. However, the knowledge of their impacts on the Neotropical ichthyofauna over time remains largely incipient, especially when considering the functional diversity of native communities. Here we aim to identify the effects of non-native species, especially the non-native piscivorous Cichla kelberi and Pygocentrus nattereri, on the functional diversity of the native ichthyofauna of the Carioca Lake, Middle Rio Doce basin, state of Minas Gerais. Using fish occurrence data for eight years from 1983 to 2010 combined with an ecomorphological-trait analysis, we found that while the native species richness dropped to 56%, the functional richness is only 27% of that found before introductions. In other words, more than species, the ichthyofauna suffered an impressive decline in the range of functional traits, which can further have severe impacts on ecological processes within that system. When considering all the components of the current ichthyofauna (native and non-native species), neither taxonomic nor functional richness have changed over time. However, even keeping biodiversity levels, non-native species are not able to fully compensate for the extinct native ones in terms of functions.

Resumo O presente estudo investigou a dieta de duas espécies de peixes pouco conhecidas da família Crenuchidae, Characidium aff. declivirostre e Leptocharacidium omospilus, sintópicas de um riacho de corredeira do município de Presidente Figueiredo, Estado do Amazonas, Brasil. O conteúdo estomacal de cada exemplar foi analisado pelos métodos de Frequência de Ocorrência (FO%) e Volume Relativo (Vol%) e, posteriormente, combinados para o cálculo do Índice Alimentar (IAi). Foram analisados 20 indivíduos de C. aff. declivirostre e 23 de L. omospilus. A sobreposição entre a dieta das duas espécies foi estimada pelo Índice Simplificado de Morisita-Horn. Insetos imaturos foram os principais itens consumidos por ambas as espécies. A dieta de C. aff. declivirostre mostrou preferência acentuada por larvas e pupas de Chironomidae, enquanto que a dieta de L. omospilus concentrou-se em larvas de Hydroptilidae, de Hydropyschidae e de Pyralidae. Portanto, as espécies foram classificadas troficamente como insetívoras consumidoras de itens autóctones. A dieta de C. aff. declivirostre foi mais especializada, o que pode ser reflexo de uma menor plasticidade alimentar ou do uso de microhabitats mais restritos, quando comparado a L. omospilus. Ao analisar os itens alimentares em nível taxonômico de família, a sobreposição alimentar foi considerada moderada (Índice de Morisita-Horn = 0,4). Entretanto, análises mais refinadas, em nível de gênero, indicaram sobreposição muito baixa na dieta. Conclui-se que tal segregação alimentar pode favorecer a coexistência de C. aff. declivirostre e L. omospilus, mesmo que sejam espécies filogeneticamente próximas.

Abstract This study assessed the diet of two poorly known syntopic fish species of the family Crenuchidae, Characidium aff. declivirostre and Leptocharacidium omospilus, in a Presidente Figueiredo´ rocky stream, Amazonas, Brazil. The stomach contents were analyzed and their Frequency of Occurrence (FO %) and Relative Volume (Vol %) were combined in a Feeding Index (IAi). We examined 20 individuals of C. aff. declivirostre and 23 of L. omospilus. The Morisita-Horn Index was used to estimate the overlap between the diets of these species. Immature insects were the most valuable items consumed by both fish species. The diet of C. aff. declivirostre was mainly composed of larvae and pupae of Chironomidae, while L. omospilus predominantly consumed larvae of Hydroptilidae, Hydropyschidae and Pyralidae. Thus, both species were classified as autochthonous insectivorous. Characidium aff. declivirostre was considered a more specialized species, probably reflecting lower feeding plasticity or the use of more restricted microhabitats compared to L. omospilus. When the food items were analyzed at the family taxonomic level, the diet overlap between these species was considered moderate (Morisita-Horn Index = 0.4). However, a more thorough analysis, at the genus level, indicates a very low diet overlap. Therefore, we conclude that the feeding segregation between C. aff. declivirostre and L. omospilus may favor their co-existence, despite their high phylogenetic closeness.

RESUMO Espécies de Centromochlus têm ampla distribuição pela América do Sul, com registros para as principais bacias como o Amazonas e Orinoco, rios com drenagens no Escudo das Guianas como Essequibo, Corentyne, Copename, Maroni e Oiapoque, e ainda pelas drenagens do Escudo Brasileiro como Alto Paraná e São Francisco. Nos últimos quatro anos foram descritas três espécies de Centromochlus elevando o número de espécies válidas para dezesseis. A nova espécie de Centromochlus aqui descrita é diagnosticada pela presença de dorso escuro abruptamente separado de um ventre branco por uma barra ondulada conspícua. A nova espécie foi descoberta no rio Nhamundá um igarapé de água clara do baixo Amazonas com rede de drenagem a partir da porção brasileira do Escudo das Guianas. Apesar de aparentemente similar a algumas espécies de Tatia (e.g. Tatia musaica , T. carolae e T. melanoleuca ), indivíduos da nova espécie apresentam uma morfologia particular do aparelho de Weber até então reportadas apenas para C. heckelii e C. existimatus , entre os bagres centromoclíneos, e que merecem maiores discussões. O novo Centromochlus inclui pequenos bagres com adultos entre 48 e 57 mm CP.

ABSTRACT Species of Centromochlus are widely distributed in South America, with records for major basins such as the Amazon and Orinoco, rivers draining the Guiana Shield such as the Essequibo, Courantyne (Corantijn), Coppename, Maroni, and Oyapock, and Brazilian Shield drainages as upper Paraná and São Francisco. In the last four years, three species of Centromochlus have been described, raising the total number of valid species to sixteen. The new species of Centromochlus described herein is diagnosed by having black ground color sharply delimited from a white underside by conspicuous wavy border. The new species is recorded from the Nhamundá, left bank tributary to the lower Amazon that drain from the Brazilian portion of the Guiana Shield. Although apparently similar to some Tatia species (e.g. Tatia musaica , T. carolae and T. melanoleuca ), the new species possess two conditions of the Weberian apparatus otherwise observed only in Centromochlus heckelii and C. existimatus among centromochlin catfishes. The new Centromochlus comprises small catfishes with adults ranging from 48 to 57 mm SL.

El estudio se realizó en el Río Mato Grosso (22º55‘ S-42º35‘ W), donde se encontraron cinco especies de peces, pertenecientes a cuatro familias y tres órdenes. Teniendo en cuenta la distancia filogenética y la evidente diferencia morfológica externa entre ellos, nuestra hipótesis es que ellos ocupan distintos mesohabitats y que las ocurrencias y densidades difieren entre mesohabitats, previamente definidos como corriente, rápido y remanso. La colección de peces fue realizada por pesca eléctrica, los peces fueron identificados, contados y devueltos al arroyo. Para la caracterización de mesohabitats se aplicó un análisis de función discriminante (AD). El número total de ejemplares fue calculado por el método de Zippin y las densidades fueron utilizadas para un análisis de especies indicadoras (AIE), seguido de la prueba MonteCarlo para 1 000 permutaciones. Los tres mesohabitats fueron separados de manera significativa por AD (WL=0.13, F=187.70, p=0.00), siendo las especies Phalloceros harpagos, Pimelodella lateristriga, Rhamdia quelen y Astyanax taeniatus indicativas del ambiente de remanso, mientras que Characidium cf. Vidali del ambiente rápido. Podemos concluir que este arroyo presenta tres mesohabitats bien definidos con la presencia de especies indicadoras en estos dos mesohabitats.

The Mato Grosso is a typical Atlantic Forest stream located on the East coast of Brazil, approximately 70km from Rio de Janeiro city. From its source at about 800m a.s.l, the stream drains a 30km² area of the Northwestern part of the municipality of Saquarema, state of Rio de Janeiro and flows into the Saquarema Lagoon system. We hypothesized that fish species occupy distinct mesohabitats, with the prediction that their occurrences and densities differ among the microhabitats of riffles, runs and pools. A 250m-long stretch of the stream located in its uppermost part was selected for this study, where it becomes second-order. Mesohabitat description and their fish characterization were undertaken. Fish sampling was conducted by electroshocking and after their identification and counting, they were returned to the stream. For mesohabitat characterization, a Discriminant Function Analysis (DA) was applied. The total number of samples was estimated by the Zippin method and the recorded densities were used as an Indicator Species Analysis (ISA), followed by a Monte Carlo test for 1 000 permutations. The DA significantly separated the three predetermined mesohabitats (pool, riffle and run) (WL=0.13, F=187.70, p=0.001). We found five species of fishes, belonging to four families and three orders. The fishes Rhamdia quelen, Phalloceros harpagos, Pimelodella lateristriga and Astyanax taeniatus are indicators of the pool environment in the Mato Grosso stream, whereas Characidium cf. vidali is an indicator of the riffle environment. The Monte Carlo test detected non-random mesohabitat use only for P. lateristriga and A. taeniatus in the pools and for Characidium cf. vidali in the riffles. We concluded that the Mato Grosso stream contains three well-defined mesohabitats, with indicator species present in two of these mesohabitats. Rev. Biol. Trop. 58 (4): 1479-1487. Epub 2010 December 01.

Concentrações de mercúrio orgânico (OrgHg) e inorgânico (InorgHg) foram avaliadas em diferentes tecidos e níveis tróficos de peixes (fígado, músculo, rim, trato digestivo e gônadas) coletados em um reservatório tropical impactado, no sudeste do Brasil. Concentrações de OrgHg no músculo foram notavelmente maiores em carnívoros (Hoplias malabaricus e Oligosarcus hepsetus). As porcentagens de OrgHg em relação ao mercúrio total (%OrgHg) no músculo também variaram de acordo com o nível trófico das espécies: 93% para os carnívoros, 84% para os onívoros, 73% para os algívoros/planctívoros e 58% para os peixes detritívoros. Além disso, a %OrgHg encontrada no trato digestivo dos peixes carnívoros (78%) foi substancialmente superior a encontrada nos onívoros (30%), possivelmente refletindo um processo de biomagnificação trófica no reservatório. Por outro lado, as concentrações de InorgHg no músculo diminuíram com o aumento do nível trófico, sugerindo que esta forma do mercúrio não biomagnificou ao longo da cadeia alimentar. As gônadas apresentaram as menores concentrações de mercúrio total e grande parte deste estava na forma orgânica (83 a 98%). Por outro lado, rins e fígado de todas as espécies de peixes apresentaram menos que 50% de OrgHg. Sugere-se que a baixa %OrgHg no fígado possa estar relacionada às diferentes capacidades ou estratégias de destoxificação do OrgHg nesses peixes

Concentrations of organic (OrgHg) and inorganic mercury (InorgHg) were assessed in different fish tissues (liver, muscle, kidney, gut and gonads) and trophic levels collected in an impacted tropical reservoir in southeastern Brazil. Organic mercury concentrations in muscle were remarkably higher in the carnivorous species Hoplias malabaricus and Oligosarcus hepsetus. The ratios of OrgHg in relation to total mercury (%OrgHg) in muscle also varied according to the species trophic level: 93% for carnivores, 84% for omnivores, 73% for algivores/planktivores and 58% for detritivores. The %OrgHg in the gut tissue of carnivores (78%) was much higher than that found in omnivores (30%), possibly reflecting a process of trophic biomagnification in the reservoir. On the other hand, the InorgHg concentrations in muscle decreased with the trophic level increase, suggesting that this form of mercury did not biomagnify through the food web. Gonads contained the least total mercury, and approximately all of this mercury was represented by the organic form (83 to 98%). The kidney and the liver of all fish species contained less than 50% OrgHg. We suggest that the low %OrgHg in the liver is related to different capacities or strategies of OrgHg detoxification by the fish.