ABSTRACT. This study aimed to propose and compare metrics of accuracy and bias of genomic prediction of breeding values for traits with censored data. Genotypic and censored-phenotypic information were simulated for four traits with QTL heritability and polygenic heritability, respectively: C1: 0.07-0.07, C2: 0.07-0.00, C3: 0.27-0.27, and C4: 0.27-0.00. Genomic breeding values were predicted using the Mixed Cox and Truncated Normal models. The accuracy of the models was estimated based on the Pearson (PC), maximal (MC), and Pearson correlation for censored data (PCC) while the genomic bias was calculated via simple linear regression (SLR) and Tobit (TB). MC and PCC were statistically superior to PC for the trait C3 with 10 and 40% censored information, for 70% censorship, PCC yielded better results than MC and PC. For the other traits, the proposed measures were superior or statistically equal to the PC. The coefficients associated with the marginal effects (TB) presented estimates close to those obtained for the SLR method, while the coefficient related to the latent variable showed almost unchanged pattern with the increase in censorship in most cases. From a statistical point of view, the use of methodologies for censored data should be prioritized, even for low censoring percentages. ABSTRACT censoredphenotypic phenotypic respectively C1 C 0.070.07, 007007 0.07 0.07, 0 07 0.07-0.07 C2 0.070.00, 007000 0.00, 00 0.07-0.00 0.270.27, 027027 0.27 0.27, 27 0.27-0.27 C4 0.270.00. 027000 0.00. 0.27-0.00 PC, , (PC) MC, (MC) (PCC (SLR TB. TB . 1 40 70 (TB method cases view prioritized percentages 070 0.070.07 00700 007 0.0 0.07-0.0 0.070.00 000 0.00 270 0.270.27 02702 027 0.2 2 0.27-0.2 0.270.00 02700 0.27-0.0 (PC (MC 4 7 0.070.0 0070 0. 0.07-0. 0.270.2 0270 02 0.27-0. 0.270.0 0.070. 0.07-0 0.270. 0.27-0 0.070 0.07- 0.270 0.27-

ABSTRACT The use of longitudinal measurements is an essential practice both in Psidium guajava L. breeding and in other perennial crops in which covariance structures can be introduced to explain the form of dependence between measurements. Hence, this study aimed to analyze six covariance structures to identify one that best described the correlation between the repeated measurements in time in traits of guava full-sib families. The repeatability coefficient for each trait was estimated and the minimum number of evaluations required for estimates representing the population was determined. The work was performed based on average data of three yield-related variables from nine harvests of a guava tree population evaluated from 2011 to 2018. The best model was chosen based on the Akaike and Schwarz Bayesian information criterion. The autoregressive covariance structure best represented the dependencies among families between crops for all traits. The number of variables of fruits and total yield per plant presented repeatability estimates higher than 0.5 and may be essential traits for indirect selection of others, such as fruit mass, which had an estimated repeatability of 0.24, proving low regularity in the repetition of the character from one cycle to another. It was also possible to define four harvests as the minimum acceptable number of observations necessary on the same individual for these traits; therefore, the repetitions represented the individuals. L Hence fullsib full sib determined yieldrelated related 201 2018 criterion 05 0 5 0. others mass 024 24 0.24 another therefore individuals 20 02 2 0.2

Resumo O objetivo deste trabalho foi avaliar as medidas biométricas e o conteúdo de nutrientes das culturas de milho, sorgo e milheto desde 30 dias após a semeadura até o momento da ensilagem. O experimento foi conduzido em delineamento de blocos ao acaso, tendo-se avaliado as três culturas, com oito repetições. A altura e o diâmetro do caule e a largura e o comprimento das folhas foram medidos para determinar o crescimento das plantas. Além disso, foram coletadas amostras para avaliar a composição química das plantas. Para a caracterização do acúmulo de nutrientes e a avaliação biométrica, foram utilizados modelos lineares e não lineares. O acúmulo de matéria seca não diferiu entre o milho e o sorgo, mas diminuiu no milheto do quinquagésimo dia até a ensilagem. Proteína bruta, cinzas e fibras em detergente neutro tendem a diminuir com o tempo. As variáveis biométricas não diferem entre o milho, o milheto e o sorgo desde 30 dias após a semeadura até o momento da ensilagem.

Abstract The objective of this work was to evaluate the biometric measurements and nutrient contents of the corn, sorghum, and pearl millet crops from 30 days after sowing up to ensiling time. The experiment was conducted in a randomized complete block design, in which the three crops were evaluated with eight replicates. Stem height and diameter and leaf length and width were measured to determine plant growth. In addition, samples were collected to evaluate plant chemical composition. For the characterization of nutrient accumulation and biometric evaluation, linear and nonlinear models were used. Dry matter accumulation did not differ between corn and sorghum, but decreased in pearl millet from the fiftieth day up to ensiling. Crude protein, ashes, and neutral detergent fiber tend to reduce over time. The biometric variables do not differ between corn, pearl millet, and sorghum from 30 days after sowing until ensiling time.

ABSTRACT The study aimed to nutritionally evaluate the silage of pineapple crop waste in sheep feeding in different planes of nutrition (L). We used eight growing sheep and four male castrated adults, in individual metabolic cages distributed in a switch-back design with two treatments and three periods. The treatments were the different planes of nutrition: L = MEI⁄Mm, MEI⁄1.5Mm, and MEI⁄2.5Mm, in which L = MEI/Mm, MEI is the energy amount of the feed intake and Mm is the maintenance. We performed a digestibility trial of the diet composed of silage of pineapple crop waste, ground corn, and soybean meal. Data were analyzed using regression analysis. Nutrient intake behaved linearly according to the increase in the L, except for organic matter, which presented a quadratic behavior. Planes of nutrition did not affect protein and fiber digestible fractions. However, digestible fractions of fat and non-fibrous carbohydrates (NFC) increased with L. The indigestible fractions displayed a quadratic behavior with an increase in the L. Regarding the microbial synthesis efficiency, we observed a linear decrease with the increase in L. Thus, the silage of pineapple crop waste is a feed very rich in NFC. Besides, silage of pineapple crop waste presented a good alternative roughage during forage shortages. Diet inclusion of 2.5x the maintenance does not compromise the sheep performance.

ABSTRACT Our objective was to evaluate whether the single nucleotide polymorphism (SNP) BIEC2-808543, identified in some horse breeds, also occurs in the Brasileiro de Hipismo (BH) breed. In addition, we verified if this SNP is related to the growth curve profile of these animals for the variables body mass, height at withers, and height at croup, using nonlinear mixed models. For the DNA isolation, we collected blood samples from 167 young BH horses. We obtained the genotypes of these animals using the polymerase chain reaction-restriction fragment length polymorphism technique. For the association studies of this polymorphism with the growth curve in foals, we selected three traits: body mass, height at withers, and height at croup. Polymorphism C/T exists in BH horses and is significantly associated with the evaluated traits. Animals that presented the TT genotype were smaller and lighter when compared with animals of the CT and CC genotypes. By the Akaike information criterion, the model that best described the growth curve for the body mass variable is the Brody model associated with the power of the mean variance function. For the height at withers variable, the best-fit model was von Bertalanffy, adjusted without polymorphism effect in parameter b, associated with the asymptotic variance. For the height at croup trait, the model that best described the growth curve was Brody model, associated with asymptotic variance. This polymorphism represents a good molecular marker. Nonlinear models are promising for describing growth curves in horses, particularly by the possibility of associating SNP effects to model parameters.

Resumo O hamster Golden é um importante biomodelo utilizado na pesquisa biomédica e como meio de diagnóstico para zoonoses. Informações de qualidade, digestibilidade, interações das matérias primas e exigências nutricionais, assim como os efeitos decorrentes dos diferentes processos de esterilização sobre o desempenho animal ainda são desconhecidos. Objetivou-se com esse estudo avaliar os efeitos da esterilização por autoclavagem e irradiação de rações peletizadas, formuladas com óleo de salmão ou linhaça, sobre a digestibilidade e parâmetros bioquímicos plasmáticos de hamsters Golden. Foram avaliados 36 hamsters Golden (Mesocricetus auratus), machos adultos distribuídos em delineamento experimental inteiramente casualizado com seis tratamentos e seis repetições, a saber: óleo de salmão comum; salmão irradiada; salmão autoclavada; óleo de linhaça comum; linhaça irradiada e linhaça autoclavada. Houve efeito significativo da esterilização sobre a digestibilidade e solubilidade proteica da ração, que foi pior para as rações autoclavadas. Também houve efeito significativo sobre os parâmetros sanguíneos. Animais alimentados com rações contendo óleo de linhaça apresentaram glicemia mais baixa em comparação aos demais. Conclui-se que o óleo de salmão e linhaça pode ser utilizado em rações para hamsters de laboratório, porém a autoclavação interfere na qualidade nutricional das dietas.

Abstract The Golden hamster has been gaining significance as a new experimental biomodel, finding use as a reliable diagnostic tool in biomedical research and for zoonosis. Authentic data in terms of digestibility, interactions among raw materials and essential nutrients, besides the influence exerted by various sterilization processes on animal behavior remain unclear. We aimed to assess the influence of sterilization, via autoclaving and irradiation, of pellet feeds prepared using salmon or linseed oil on the digestibility and plasma biochemical parameters in Golden hamsters. Randomized evaluations were conducted on 36 adult male Golden hamsters (Mesocricetus auratus), distributed in six treatments and six replications, namely: common salmon oil; radiated salmon; autoclaved salmon; common linseed oil; radiated linseed and autoclaved linseed. A remarkable effect of the sterilization was evident on the digestibility and protein solubility of the feed, which was lower for autoclaved diets. There was also a significant effect on blood parameters. Animals fed diets containing linseed oil showed lower blood glucose compared to the others. Thus, the inference reached was that while salmon and linseed oil can be used in laboratory hamster feeds, autoclaving disturbs the nutritional quality of the rations.

ABSTRACT In order to optimize the performance and reduce costs in the larviculture of ornamental carp (Cyprinus carpio) in a recirculating aquaculture system, different feeding strategies were tested. For this, two experiments were carried out both under controlled conditions in a greenhouse, in a recirculating aquaculture system with a physical particle filter, biofilter, and filtering by ultra-violet irradiation. In the first experiment, measurements of Artemia nauplii were tested in the initial exogenous feeding of larvae at concentrations of 100, 200, 400, 600, 800 and 1,000 Artemia nauplii per larvae. In the following experiment, different protocols were tested for initial feeding for larvae. At this stage, were used: live food (Artemia nauplii) and inert (powder meal), used separately and simultaneously, and increases in the number of Artemia nauplii were also tested, offered at different times of cultivation. In the first experiment, the amount of 600 Artemia nauplii for larvae demonstrated to be the best option as it generated significant growth and the cost was less than that observed with the use of 800 and 1000 Artemia nauplii per larvae. The second experiment demonstrated that the feeding strategy with live food more commercial inert feed provided the best growth performance for ornamental carp larvae. The need to fix the amount of live food during the cultivation, probably due to the high specific growth rates observed during the larval stage also became evident.

ABSTRACT. The purpose of this study was to evaluate the effect of interaction between increasing neutral detergent fiber content and particle sizes on ingestive behavior of dairy goats. Forty-eight lactating, multiparous Saanen and Alpine goats, with average milk production of 1.4 ±0.57 kg d-1, around 60th ±12 day of lactation were distributed in a 3 x 4 factorial completely randomized design. The diets consisted: three particles sizes (02, 05 or 15 cm) and four levels of neutral detergent fiber (34, 41, 49 or 57% NDFf) from forage (Tifton 85 hay). The ingestive behavior was monitored during 24 hours. A regression and a multivariate time series cluster analysis were performed. No interaction was found (p > 0.05) between treatments. Feeding time was different according to the particle size, having an increasing linear effect. Rumination and idle times were not affected (p > 0.05). The temporal feeding behavior was clustered into two groups according to the profile of particle size of the diet. Rumination peaks were randomly distributed with more intense activity before morning and afternoon meals. The increase in NDFf content in the diet did not change the ingestive behavior. The multivariate cluster analysis in a time series data is useful to interpret animal feeding behavior.

ABSTRACT: Genome association analyses have been successful in identifying quantitative trait loci (QTLs) for pig body weights measured at a single age. However, when considering the whole weight trajectories over time in the context of genome association analyses, it is important to look at the markers that affect growth curve parameters. The easiest way to consider them is via the two-step method, in which the growth curve parameters and marker effects are estimated separately, thereby resulting in a reduction of the statistical power and the precision of estimates. One efficient solution is to adopt nonlinear mixed models (NMM), which enables a joint modeling of the individual growth curves and marker effects. Our aim was to propose a genome association analysis for growth curves in pigs based on NMM as well as to compare it with the traditional two-step method. In addition, we also aimed to identify the nearest candidate genes related to significant SNP (single nucleotide polymorphism) markers. The NMM presented a higher number of significant SNPs for adult weight (A) and maturity rate (K), and provided a direct way to test SNP significance simultaneously for both the A and K parameters. Furthermore, all significant SNPs from the two-step method were also reported in the NMM analysis. The ontology of the three candidate genes (SH3BGRL2, MAPK14, and MYL9) derived from significant SNPs (simultaneously affecting A and K) allows us to make inferences with regards to their contribution to the pig growth process in the population studied.

RESUMO Objetivou-se comparar os modelos multicaracterístico e de repetibilidade na estimação de parâmetros genéticos para as características número de leitões nascidos vivos (NLN) e às três semanas de idade (NL3), peso da leitegada ao nascimento (PLN) e às três semanas de idade (PL3), e peso médio do leitão ao nascimento (PMLN) e às três semanas de idade (PML3), considerando os três primeiros partos de fêmeas da raça Landrace. As estimativas de herdabilidade (h2) aumentaram até a terceira ordem de parto para as características PLN e PML3. Para NLN, NL3, PL3 e PMLN as h2 aumentaram da primeira para a segunda parição e reduziram da segunda para terceira parição. Em geral, as herdabilidades estimadas via modelo de repetibilidade foram menores que a média das estimativas obtidas utilizando o modelo muticaracterístico. As características PLN, PMLN e PML3 apresentaram altas correlações genéticas entre as diferentes parições (0,961–0,997), enquanto as características NLN, NL3 e PL3 (0,092–0,986) apresentaram valores irregulares de correlações genéticas entre as parições. Pelo critério de informação de Akaike corrigido o modelo de repetibilidade não foi indicado para a maioria das características estudadas. Esses resultados indicam que o modelo multicaracterístico é recomendado para avaliação genética das características número de leitões nascidos vivos e às três semanas de idade, peso da leitegada ao nascimento e às três semanas de idade e peso médio do leitão ao nascimento e às três semanas de idade, em diferentes parições, como características diferentes.

SUMMARY We aimed to compare multi-trait and repeatability models to estimate genetic parameters for the traits number of piglets born alive (NBA) and alive at 3 week of age (NP3), litter weight at birth (LW0) and at 3 week of age (LW3), and mean piglet weight at birth (MW0) and at 3 week of age (MW3), considering the first three farrowings of Landrace sows. Heritability (h2) estimates showed an increasing pattern up to the third farrowing for LW0 and MW3. For NBA, NP3, LW3, and MW0 h2 increased from the first to the second and decreased from the second to the third farrowing. In general, heritability estimated in the repeatability model was lower than the mean of the estimates in the multi-trait model. The traits LWO, MW0, and MW3 presented high genetic correlation among different farrowings (0.961–0.997), while NBA, NP3, and LW3 (0.092–0.986) presented irregular values among farrowings. The corrected Akaike information criterion shows that the repeatability model is not indicated for almost all of the studied traits. These results indicate that the multi-trait model is recommended for genetic evaluation of the traits number of piglets born alive and alive at 3 week of age, litter weight and mean piglet weight at birth and 3 week of age, in different farrowings, as different traits.

ABSTRACT The objective of this study was to evaluate the intake and digestibility of silages containing pineapple pulp and coast-cross hay, with or without addition of urea, and the recovery of the markers chromium oxide (Cr2O3), indigestible neutral detergent fiber (iNDF), indigestible acid detergent fiber (iADF), and indigestible dry matter (iDM), in a digestibility assay, in sheep. Treatments were as follows: two levels of pineapple pulp (818 and 758 g kg−1) and two levels of urea (with and without urea), in a completely randomized design. Twelve sheep (three per treatment) were used, kept in metabolic cages. Fecal excreta were determined by total collection or estimated by using the markers. Marker samples were obtained in morning and afternoon collections, with mean concentrations obtained for both daily activities. The level of silage pulp did not affect intake, while addition of urea increased the intake of crude protein (CP), but did not influence the intakes of dry matter, organic matter, neutral detergent fiber, or acid detergent fiber. The digestibility coefficients of all afore-mentioned fractions increased with the increase in pulp, the same happening with the addition of urea. The internal marker with lowest variability among the internal markers was iADF, with mean values near 100%. Mean recovery of Cr2O3 was approximately 107%, but with lower variability among treatments. Inclusion of pineapple pulp in silage does not influence intake, while addition of urea only increases the intake of CP. The levels of pineapple pulp in silage with or without urea increase the digestibility of the silage. Indigestible acid detergent fiber is the marker with lowest variability of recovery, with mean recovery for the four silages used very close to 100%.

ABSTRACT The objective of this study was to simulate total dry matter intake and cost of diets optimized by nonlinear programming to meet the nutritional requirements of dairy does and growing doelings. The mathematical model was programmed in a Microsoft Excel(r) spreadsheet. Increasing values of body mass and average daily weight gain for growing doelings and increasing body mass values and milk yield for dairy does were used as inputs for optimizations. Three objective functions were considered: minimization of the dietary cost, dry matter intake maximization, and maximization of the efficiency of use of the ingested crude protein. To solve the proposed problems we used the Excel(r) Solver(r) algorithm. The Excel(r) Solver(r) was able to balance diets containing different objective functions and provided different spaces of feasible solutions. The best solutions are obtained by least-cost formulations; the other two objective functions, namely maximize dry matter intake and maximize crude protein use, do not produce favorable diets in terms of costs.

ABSTRACTThe objective of this study was to evaluate the nutritive value of passion fruit by-product for cattle, contrasting the results with those found with sorghum silage. Four treatments were then constituted, comprising the combinations of the two roughages and the two levels of supplementation (with or without), in a completely randomized design with four animals per treatment. The considered variables included: feed intake, digestibility coefficients of the diets, and live weight gain of the animals. The experimental period lasted 70 days, preceded by a standardization period of 30 days. Chromium oxide was utilized to estimate the fecal output, in the digestibility trial. Treatments were compared by means of three orthogonal contrasts: between the two roughages and between the two concentrate levels within each roughage. Animals fed passion fruit by-product showed higher feed intake (total, per 100 kg of live weight (TLW), and per unit metabolic size) and had higher TLW gain than those fed sorghum silage (1.304 kg vs. 0.134 kg). The coefficients of apparent digestibility of dry matter (DM), organic matter (OM), and crude protein (CP) and the digestibility coefficient of neutral detergent fiber from passion fruit by-product were high, and much higher than those from sorghum silage. The concentrate supplement did not improve the TLW gain of animals fed passion fruit by-product and had a limiting effect on the digestibility coefficients of the diet. The concentrate supplement had a positive associative effect on intake and digestibility coefficients of DM, OM, and CP from sorghum silage. The by-product of fresh passion fruit is an excellent food for growing cattle as it provides high intake levels and weight gains, even when supplied as the only feed.

A nutritional analysis of Tanzania grass (Megathyrsus maximusJacquin cv. Tanzânia was conducted. Pasture was managed in a rotational grazing system with a 30-day resting period, three days of paddock occupation and two grazing cycles. Ten Holstein × Zebu crossbred cows were kept within a 2-ha area divided into 11 paddocks ha-1. Cows were fed 2 kg of corn meal daily and performance was evaluated by weighing the animals every 14 days and by recording milk production twice a day. Nutritional composition of the Tanzania grass was determined from forage (extrusa) samples collected by esophageal fistulae from two animals. The nutritive value of Tanzania grass was estimated according to a modification of the CNCPS evaluation model. Tanzania grass supplemented with 2 kg of corn meal supplied 33.2% more net energy for lactation than required by the animals to produce 13.7 kg of milk day-1. Nevertheless, the amount of metabolizable protein met the daily protein requirement of the animals. Although the model used in the study requires adjustments, Tanzania grass has the potential to produce milk in a rotational grazing system.