Resumo O câncer é uma doença maligna fatal e sua crescente prevalência mundial exige a descoberta de biomarcadores moleculares mais sensíveis e confiáveis. Investigar o nível de expressão de GINS1 e seu valor prognóstico em cânceres humanos distintos, usando uma série de abordagens in silico em várias camadas, pode ajudar a estabelecê-lo como um potencial biomarcador de diagnóstico e prognóstico compartilhado de diferentes subtipos de câncer. O mRNA de GINS1, a expressão da proteína e a metilação do promotor foram analisados usando UALCAN e Human Protein Atlas (HPA), enquanto a expressão de mRNA foi posteriormente validada via GENT2. Os valores prognósticos potenciais de GINS1 foram avaliados por meio do plotter KM. Em seguida, o cBioPortal foi utilizado para examinar as mutações genéticas relacionadas ao GINS1 e as variações do número de cópias (CNVs), enquanto a análise de enriquecimento da via foi realizada usando DAVID. Além disso, uma análise correlacional entre a expressão de GINS1 e células imunes T CD8 + e a construção de uma rede de interação gene-droga foi realizada usando TIMER, CDT e Cytoscape. O GINS1 foi encontrado regulado negativamente em um único subtipo de câncer humano, enquanto comumente regulado positivamente em 23 outros subtipos diferentes. A regulação positiva de GINS1 foi significativamente correlacionada com a sobrevida global pobre (OS) de Carcinoma Hepatocelular de Fígado (LIHC), Adenocarcinoma de Pulmão (LUAD) e Carcinoma de Células Claras Renais de Rim (KIRC). O GINS1 também foi encontrado regulado positivamente em pacientes LIHC, LUAD e KIRC de diferentes características clínico-patológicas. A análise de enriquecimento de vias revelou o envolvimento de GINS1 em duas vias diversas, enquanto poucas correlações interessantes também foram documentadas entre a expressão de GINS1 e seu nível de metilação do promotor, nível de células imunes T CD8 + e CNVs. Além disso, também previmos poucos medicamentos que poderiam ser usados no tratamento de LIHC, LUAD e KIRC, regulando a expressão de GINS1. O perfil de expressão de GINS1 no estudo atual sugeriu que é um novo biomarcador de diagnóstico e prognóstico compartilhado de LIHC, LUAD e KIRC.

Abstract Cancer is a fatal malignancy and its increasing worldwide prevalence demands the discovery of more sensitive and reliable molecular biomarkers. To investigate the GINS1 expression level and its prognostic value in distinct human cancers using a series of multi-layered in silico approach may help to establish it as a potential shared diagnostic and prognostic biomarker of different cancer subtypes. The GINS1 mRNA, protein expression, and promoter methylation were analyzed using UALCAN and Human Protein Atlas (HPA), while mRNA expression was further validated via GENT2. The potential prognostic values of GINS1 were evaluated through KM plotter. Then, cBioPortal was utilized to examine the GINS1-related genetic mutations and copy number variations (CNVs), while pathway enrichment analysis was performed using DAVID. Moreover, a correlational analysis between GINS1 expression and CD8+ T immune cells and a the construction of gene-drug interaction network was performed using TIMER, CDT, and Cytoscape. The GINS1 was found down-regulated in a single subtypes of human cancer while commonly up-regulated in 23 different other subtypes. The up-regulation of GINS1 was significantly correlated with the poor overall survival (OS) of Liver Hepatocellular Carcinoma (LIHC), Lung Adenocarcinoma (LUAD), and Kidney renal clear cell carcinoma (KIRC). The GINS1 was also found up-regulated in LIHC, LUAD, and KIRC patients of different clinicopathological features. Pathways enrichment analysis revealed the involvement of GINS1 in two diverse pathways, while few interesting correlations were also documented between GINS1 expression and its promoter methylation level, CD8+ T immune cells level, and CNVs. Moreover, we also predicted few drugs that could be used in the treatment of LIHC, LUAD, and KIRC by regulating the GINS1 expression. The expression profiling of GINS1 in the current study has suggested it a novel shared diagnostic and prognostic biomarker of LIHC, LUAD, and KIRC.

Resumo A hibridização e a poliploidização são os fenômenos mais comuns observados em plantas, principalmente no gênero Nicotiana, levando à duplicação do genoma. Embora as mudanças genômicas associadas a esses eventos tenham sido estudadas em vários níveis, o tamanho do genoma e a variação do conteúdo de GC são menos compreendidos devido à ausência de dados genômicos suficientes. Neste estudo, a técnica de citometria de fluxo foi usada para descobrir o tamanho do genoma e o conteúdo de GC de 46 espécies de Nicotiana, e comparamos as mudanças genômicas associadas aos eventos de hibridização ao longo da escala de tempo evolutiva. O tamanho do genoma entre as espécies de Nicotiana variou entre 3,28 pg e 11,88 pg, enquanto os conteúdos de GC variaram entre 37,22% e 51,25%. As espécies tetraploides do gênero Nicotiana, incluindo as seções Polydiclae, Repandae, Nicotiana, Rustica e Sauveolentes, revelaram aumento e redução do tamanho do genoma quando comparados à soma dos genomas de suas espécies ancestrais. Os tamanhos do genoma de três híbridos homoploides foram encontrados perto de suas espécies ancestrais. A perda da grande sequência do genoma foi observada nas espécies evolutivas mais velhas (> 10 Myr) em comparação com as que evoluíram recentemente (< 0,2 Myr). Os teores de GC foram homogêneos com diferença média de 2,46% entre as espécies de Nicotiana. Conclui-se que a mudança no tamanho do genoma apareceu em ambas as direções, enquanto os conteúdos de GC foram encontrados mais homogêneos no gênero Nicotiana.

Abstract Hybridization and Polyploidization are most common of the phenomenon observed in plants, especially in the genus Nicotiana leading to the duplication of genome. Although genomic changes associated with these events has been studied at various levels but the genome size and GC content variation is less understood because of absence of sufficient genomic data. In this study the flow cytometry technique was used to uncover the genome size and GC contents of 46 Nicotiana species and we compared the genomic changes associated with the hybridization events along evolutionary time scale. The genome size among Nicotiana species varied between 3.28 pg and 11.88 pg whereas GC contents varied between 37.22% and 51.25%. The tetraploid species in genus Nicotiana including section Polydiclae, Repandae, Nicotiana, Rustica and Sauveolentes revealed both up and downsizing in their genome sizes when compared to the sum of genomes of their ancestral species. The genome sizes of three homoploid hybrids were found near their ancestral species. Loss of large genome sequence was observed in the evolutionary more aged species (>10 Myr) as compared to the recently evolved one’s (<0.2 Myr). The GC contents were found homogenous with a mean difference of 2.46% among the Nicotiana species. It is concluded that genome size change appeared in either direction whereas the GC contents were found more homogenous in genus Nicotiana.

Abstract Repeated heating of fat oil may result in the formation of highly toxic aldehyde compounds. The oils having such compounds are considered as health hazards and therefore their repeated use is banned in many countries. Since huge quantities of the used oil need urgent disposal, this work is focused on the disposal of used oil for the resource recovery. The waste fat oil was converted into useful fuel through catalytic and non-catalytic pyrolysis. The catalyst was used to lower the oxygen content and to increase the amount of the hydrocarbons in the oil product. The pyrolysis reaction was catalyzed by three catalysts of the clinker type, namely ordinary Portland cement, white cement and burnt clay/clinker powder. The pyrolysis reactions were performed using a custom-made furnace and stainless steel pyrolyzer. Optimum temperature, time and catalyst quantity were identified for high liquid and gaseous fractions and low solid residue. The oil obtained during each reaction was characterized for chemical composition by using GC-MS technique. The oil product of simple pyrolysis, cement catalyzed, white cement catalyzed and clinker catalyzed pyrolysis had the hydrocarbon contents of 3%, 19%, 51% and 93%, respectively.

RESUMO: O uso de herbicidas sintéticos no controle de plantas daninhas representa uma séria ameaça à produção agrícola sustentável no mundo todo. O efeito fitotóxico de diferentes extratos aquosos de plantas (por ex., sorgo, girassol e amora silvestre) sobre as plantas daninhas foi estudado anteriormente; no entanto, seus efeitos combinados em taxas diferentes ainda precisam ser explorados. Neste estudo, misturas de extratos aquosos alelopáticos de sorgo + girassol e sorgo + girassol + amora foram pulverizados cada a 12, 15, 18 e 21 L ha-1 aos 40 e 55 dias após a semeadura em trigo para controle da aveia selvagem (Avena fatua), erva-cabecinha (Phalaris minor), ançarinha-branca (Chenopodium album) e mastruço (Coronopus didymus). Um herbicida sintético Affinity 50 WP (carfentrazona-etílica 0,75% + Isoproturão 50% aplicado a 1000 g i.a., ha-1) e a capina foram mantidos como tratamento de controle. A ordem crescente da dose de extrato aquoso 12-21 L ha-1 mostrou uma redução substancial na densidade total de plantas daninhas e na produção de biomassa seca de plantas daninhas de folhas estreitas e de folhas largas em todas as combinações de tratamento. A mistura de extratos de sorgo + girassol + amora cada um a 18 L ha-1 aos 40+55 DAS resultou em uma diminuição de 87,14% na matéria seca total de plantas daninhas com 19,5% de rendimento de trigo e maiores benefícios líquidos de Rs. 100525 com taxa marginal de retorno de 777,5%. No entanto, a aplicação de extratos aquosos de sorgo + girassol cada um a12 L ha-1 aos 40+55 DAS foi mais econômica que os demais tratamentos em termos de maior taxa marginal de retorno, de 799,82%. Com base neste estudo, pode-se sugerir que o uso de extratos aquosos de plantas com efeito alelopático em mistura pode atuar como uma estratégia potencial de controle de plantas daninhas no trigo.

ABSTRACT: Use of synthetic herbicides to control weeds poses serious threats to sustainable agricultural production around the globe. The phytotoxic effect of different plant water extracts (i.e., sorghum, sunflower and mulberry) against weeds has been previously studied; however, their combined effects at different rates are yet to be explored. In this study, mixtures of allelopathic water extracts of sorghum + sunflower and sorghum + sunflower + mulberry were sprayed each at 12, 15, 18 and 21 L ha-1 at 40 and 55 days after sowing in wheat to control wild oats (Avena fatua), little seed canary grass (Phalaris minor), lamb’s quarters (Chenopodium album) and swine cress (Coronopus didymus). A synthetic herbicide Affinity 50 WP (Carfentrazone-ethyl 0.75% + Isoproturon 50% applied at 1000 g a.i., ha-1) and a weedy check were kept as a control treatment. The increasing order of water extract dose 12-21 L ha-1 showed substantial reduction in total weed density and their dry biomass production of both narrow and broad-leaved weeds in all the treatment combinations. Mixture of sorghum + sunflower + mulberry water extracts each at 18 L ha-1 applied at 40+55 DAS resulted in an 87.14% decrease in total weed dry matter with a 19.5% increase in grain yield of wheat and higher net benefits of Rs. 100525 with 777.5% marginal rate of return. Nonetheless, application of sorghum + sunflower water extracts each at 12 L ha-1 at 40+55 DAS was more economical than the other treatments in terms of higher marginal rate of return of 799.82%. Based on this study, it can be suggested that the use of allelopathic plant water extracts in a mixture may act as a potential weed control strategy in wheat.

Discharge of industrial effluents in aquatic environments is a serious threat to life due to toxic heavy metals. Plants can be used as cheap phytoremedients in comparison to conventional technologies. The present study was conducted to check the phytoremediation capability of two free-floating plants, i.e., Pistia stratiotes and Eichhornia crassipes, for the removal of heavy metals from steel effluent by using Atomic Absorption Spectrophotometry. P. stratiotes was able to remove some of the heavy metals, showing the highest affinity for Pb and Cu with 70.7% and 66.5% efficiency, respectively, while E. crassipes proved to be the best phytoremediant for polluted water as its efficiency was greatest progressively for Cd, Cu, As, Al and Pb, i.e., 82.8%, 78.6%, 74%, 73% and 73%, respectively. In conclusion, aquatic plants can be a better candidate for phytoextraction from industrial effluents due to cost effectiveness.