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Abstract Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was the responsible for the coronavirus disease 2019 (COVID-19) pandemic. Because of its high transmissibility, allied to the emergence of some variants of concern (VOC), like Alpha, Beta, Gamma, Delta, and Omicron, the detection of these strains must be rapid and efficient. Among the tests available, the reverse-transcriptase polymerase-chain reaction (RT-PCR) is considered the gold standard test for COVID-19 detection, and the use of specific primers and probes can discriminate the different COVID-19 variants. In this study, we screened 317 individuals tested positive for COVID-19 from the municipality of Ponta Grossa (Paraná State, Brazil), from April/2021 to February/2022, aiming to identify the Gamma, Delta, and Omicron variants, by RT-PCR, using specific probes. The Gamma variant was detected from April/2021 to September/2021. The Delta variant was subsequently detected from August/2021 to November/2021. The Omicron variant was the unique strain detected from December/2021 to February/2022 and, because of its high rate of transmissibility, it caused a considerable increase in the number of COVID-19 infections. Mass testing is considered an important strategy for COVID-19 control and, the correct detection of new strains, could improve the knowledge about the virus´ behavior, permitting the development of drugs and optimized vaccines. SARSCoV2 SARSCoV SARS CoV (SARS-CoV-2 201 COVID19 COVID 19 (COVID-19 pandemic transmissibility VOC, VOC , (VOC) Alpha Beta efficient available reversetranscriptase reverse transcriptase polymerasechain polymerase chain RTPCR RT PCR (RT-PCR COVID-1 study 31 Paraná State Brazil, Brazil Brazil) April2021 April 2021 April/202 February2022 February 2022 RTPCR, PCR, RT-PCR September2021 September September/2021 August2021 August August/202 November2021 November November/2021 December2021 December December/202 February/202 infections virus behavior vaccines (SARS-CoV- 20 COVID1 1 (COVID-1 (VOC COVID- 3 April202 202 April/20 February202 September202 September/202 August202 August/20 November202 November/202 December202 December/20 February/20 (SARS-CoV (COVID- April20 April/2 February20 September20 September/20 August20 August/2 November20 November/20 December20 December/2 February/2 (COVID April2 April/ February2 September2 September/2 August2 August/ November2 November/2 December2 December/ February/ September/ November/