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Global phylogeography of the critically endangered hawksbill turtle (Eretmochelys imbricata)
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Arantes, Larissa S.

; Vargas, Sarah M.

; Santos, Fabrício R.

Genetics and Molecular Biology

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2020, Volume 43 N. 2 elocation e20190264

Abstract: En | Text: En | PDF: En

Abstract The hawksbill turtle is a broadly distributed, highly migratory and critically endangered sea turtle species. The paucity of studies restricts the comprehension of its behavior and life history. In this work, we performed a global phylogeographic analysis using a compilation of previously published mitochondrial haplotype data to understand the dynamics and diversity of hawksbill populations worldwide. Our results revealed a complex demographic pattern associated to hawksbill phylogeography since the Pliocene. Isolation by distance is not enough to explain distinct demographic units of hawksbill turtles, which are also influenced by other factors as oceanic currents, coral reef distribution and nesting timing. The foraging aggregations are typically mixed stocks of individuals originating from multiple nesting areas, but there is also a trend of foragers coming from nearby natal beaches. Phylogenetic analysis indicates two highly divergent major lineages split between Atlantic and Indo-Pacific rookeries, but there is also a more recent Atlantic Ocean colonization from the Indo-Pacific Ocean. Long-distance dispersal events are likely responsible for homogenization between distant populations within oceans. Our findings provided new insights about population connectivity, identified gaps that should be prioritized in future research and highlighted the need for international efforts aiming at hawksbill's conservation.

https://doi.org/10.1590/1678-4685-gmb-2019-0264 2002 downloads

A hybrid swarm of manatees along the Guianas coastline, a peculiar environment under the influence of the Amazon River plume
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LIMA, CAMILLA S.

; MAGALHÃES, RAFAEL F.

; MARMONTEL, MIRIAM

; MEIRELLES, ANA CAROLINA

; CARVALHO, VITOR LUZ

; LAVERGNE, ANNE

; THOISY, BENOIT DE

; SANTOS, FABRÍCIO R.

Anais da Academia Brasileira de Ciências

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2019, Volume 91 elocation e20190325

Abstract: En | Text: En | PDF: En

Abstract: The West Indian (Trichechus manatus) and Amazonian (T. inunguis) manatees have a sympatric occurrence at the mouth of the Amazon River. A result of this interspecific encounter is the occurrence of hybrids, which are frequently found along the coasts of Amapá state in Brazil, French Guiana and Guyana. Here we present new genetic evidence indicating the occurrence of a hybrid swarm along the Guianas Shield coastline, which is an interspecific hybrid zone that also separates T. manatus populations located east (Brazil) and west (Caribbean, Gulf of Mexico, Florida and Antilles). In addition, we suggest that this hybrid population occupies a peculiar mangrove-rich environment under strong influence of the Amazon River plume, which requires an independent management and should be considered a special conservation area.

https://doi.org/10.1590/0001-3765201920190325 1618 downloads

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes
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Lima, Nicholas Costa Barroso

; Soares, André Elias Rodrigues

; Almeida, Luiz Gonzaga de Paula

; Costa, Igor Rodrigues da

; Sato, Fernanda Midori

; Schneider, Patricia

; Aleixo, Alexandre

; Schneider, Maria Paula

; Santos, Fabrício R.

; Mello, Claudio V.

; Miyaki, Cristina

; Vasconcelos, Ana Tereza R.

; Prosdocimi, Francisco

Genetics and Molecular Biology

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sep 2018, Volume 41 N. 3 Pages 593 - 604

Abstract: En | Text: En | PDF: En

Abstract Amazon parrots are long-lived birds with highly developed cognitive skills, including vocal learning. Several parrot mitogenomes have been sequenced, but important aspects of their organization and evolution are not fully understood or have limited experimental support. The main aim of the present study was to describe the mitogenome of the blue-fronted Amazon, Amazona aestiva, and compare it to other mitogenomes from the genus Amazona and the order Psittaciformes. We observed that mitogenomes are highly conserved among Amazon parrots, and a detailed analysis of their duplicated control regions revealed conserved blocks. Population level analyses indicated that the specimen analyzed here seems to be close to A. aestiva individuals from Bahia state. Evolutionary relationships of 41 Psittaciformes species and three outgroups were inferred by BEAST. All relationships were retrieved with high support.

https://doi.org/10.1590/1678-4685-gmb-2017-0023 1973 downloads

Brazilian legislation on genetic heritage harms Biodiversity Convention goals and threatens basic biology research and education
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ALVES, RUY JOSÉ V.

; WEKSLER, MARCELO

; OLIVEIRA, JOÃO A.

; BUCKUP, PAULO A.

; POMBAL JR., JOSÉ P.

; SANTANA, HÉLCIO R.G.

; PERACCHI, ADRIANO LÚCIO

; KELLNER, ALEXANDER W.A.

; ALEIXO, ALEXANDRE

; LANGGUTH, ALFREDO

; ALMEIDA, ALZIRA MARIA P. DE

; ALBERNAZ, ANA LUISA

; RIBAS, CAMILA C.

; ZILBERBERG, CARLA

; GRELLE, CARLOS EDUARDO V.

; ROCHA, CARLOS F.D.

; LAMAS, CARLOS JOSÉ E.

; HADDAD, CÉLIO F.B.

; BONVICINO, CIBELE R.

; PRADO, CYNTHIA P.A.

; LIMA, DANIELA O. DE

; ROSSA-FERES, DENISE C.

; SANTOS, FABRÍCIO R. DOS

; SALIMENA, FÁTIMA REGINA G.

; PERINI, FERNANDO A.

; BOCKMANN, FLÁVIO A.

; FRANCO, FRANCISCO LUÍS

; GIUDICE, GISELE M.L. DEL

; COLLI, GUARINO R.

; VIEIRA, IMA CÉLIA G.

; MARINHO-FILHO, JADER

; WERNECK, JANE M.C.F.

; SANTOS, JORGE A.D. DOS

; NASCIMENTO, JORGE LUIZ DO

; NESSIMIAN, JORGE LUIZ

; CORDEIRO, JOSÉ LUIS P.

; CLARO, KLEBER DEL

; SALLES, LEANDRO O.

; CASATTI, LILIAN

; PY-DANIEL, LUCIA HELENA R.

; SILVEIRA, LUÍS FÁBIO

; TOLEDO, LUÍS FELIPE

; OLIVEIRA, LUIZ F. DE

; MALABARBA, LUIZ ROBERTO

; SILVA, MARCELO D. DA

; COURI, MÁRCIA S.

; MARTINS, MÁRCIO

; TAVARES, MARCOS D.S.

; SOBRAL, MARCOS EDUARDO G.

; VIEIRA, MARCUS VINÍCIUS

; OLIVEIRA, MARIA DE LOURDES A.

; PINNA, MÁRIO DE

; HOPKINS, MICHAEL J.G.

; SOLÉ, MIRCO

; MENEZES, NAÉRCIO A.

; PASSOS, PAULO

; D’ANDREA, PAULO SERGIO

; PINTO, PEDRO C.E.A.

; VIANA, PEDRO L.

; TOLEDO, PETER M.

; REIS, ROBERTO E.

; VILELA, ROBERTO

; BASTOS, ROGÉRIO P.

; COLLEVATTI, ROSANE G.

; CERQUEIRA, RUI

; CASTROVIEJO-FISHER, SANTIAGO

; CARAMASCHI, ULISSES

Anais da Academia Brasileira de Ciências

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apr 2018, Volume 90 N. 2 Pages 1279 - 1284

Abstract: En | Text: En | PDF: En

https://doi.org/10.1590/0001-3765201820180460 7311 downloads

Population structure and genetic diversity of the giant anteater (Myrmecophaga tridactyla: Myrmecophagidae, Pilosa) in Brazil
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Clozato, Camila L.

; Miranda, Flávia R.

; Lara-Ruiz, Paula

; Collevatti, Rosane G.

; Santos, Fabrício R.

Genetics and Molecular Biology

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mar 2017, Volume 40 N. 1 Pages 50 - 60

Abstract: En | Text: En | PDF: En

Abstract The giant anteater (Myrmecophaga tridactyla, Pilosa, Linnaeus 1758) belongs to the mammalian order Pilosa and presents a large distribution along South America, occupying a great variety of habitats. It is listed in the IUCN Red List of threatened species as Vulnerable. Despite threatened, there is a lack of studies regarding its genetic variability. The aim of this study was to examine the genetic diversity and patterns of genetic structure within remaining populations. We analyzed 77 individuals from seven different populations distributed in four biomes across Brazil: Cerrado, Pantanal, Atlantic Forest and Amazon Forest. We sequenced two mitochondrial markers (control region and Cyt-b) and two nuclear markers (AMELY and RAG2). We found high genetic diversity within subpopulations from National Parks of Serra da Canastra and Emas, both within the Cerrado biome, with signs of population expansion. Besides, we found a notable population structure between populations from the Cerrado/Pantanal and Amazon Forest biomes. This data is a major contribution to the knowledge of the evolutionary history of the species and to future management actions concerning its conservation.

https://doi.org/10.1590/1678-4685-gmb-2016-0104 1536 downloads

Chromobacterium sp. from the tropics: detection and diversity of phytase activity
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Costa, Patrícia S

; Nascimento, Andréa M.A

; Lima-Bittencourt, Cláudia I

; Chartone-Souza, Edmar

; Santos, Fabrício R

; Vilas-Boas, Adlane

Brazilian Journal of Microbiology

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mar 2011, Volume 42 N. 1 Pages 84 - 88

Abstract: En | Text: En | PDF: En

Phytases are a group of enzymes that catalyze phytic acid hydrolysis with release of phosphorus (P). The ability of Chromobacterium sp. to produce phytase was detected in 115 out of 118 candidate bacteria isolated from different Brazilian biomas. This is the first report revealing the genus Chromobacterium as phytase producer.

2196 downloads

Sex ratio and morphological characteristics of rufous gnateaters, Conopophaga lineata (Aves, Passeriformes) in Atlantic forest fragments
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Dantas, Gisele P. M.

; Santos, Fabrício R.

; Marini, Miguel Ângelo

Iheringia. Série Zoologia

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mar 2009, Volume 99 N. 1 Pages 115 - 119

Abstract: Pt En | Text: Pt En | PDF: Pt | PDF: En

A razão sexual desigual pode levar à perda de variabilidade genética, diminuindo a viabilidade das populações em longo prazo. Atividades antrópicas causam alterações nos hábitats e podem causar mudanças na razão sexual e na morfologia de muitas espécies. A fragmentação florestal é uma grande preocupação em conservação e entender os seus efeitos em populações naturais é fundamental. Assim, neste estudo buscamos investigar a razão sexual e algumas características morfológicas do chupa-dente (Conopophaga lineata (Wied, 1831)) em fragmentos pequenos e grandes no Estado de Minas Gerais, Brasil. As aves (n = 89) foram sexadas através de características da plumagem e através de marcadores moleculares. Marcadores moleculares indicaram que a identificação por plumagem não é um método totalmente confiável para essa espécie. Observamos que a razão sexual não difere entre os fragmentos grandes e pequenos, mas os indivíduos dos fragmentos pequenos apresentaram asas e tarsos maiores. Modificações nas asas e tarsos podem causar alterações no deslocamento dos indivíduos dentro e entre os fragmentos. Portanto, os chupa-dentes têm sido capazes de sobreviver mesmo nos pequenos fragmentos de Mata Atlântica sem sofrer alterações na razão sexual. Porém, as diferenças morfológicas apresentadas podem ser prejudiciais para a sobrevivência da espécie a longo prazo.

Unequal sex ratios lead to the loss of genetic variability, decreasing the viability of populations in the long term. Anthropogenic activities often disturb the natural habitats and can cause alterations in sex ratio and morphological characteristics of several species. Forest fragmentation is a major conservation concern, so that understanding its effects in natural populations is essential. In this study, we evaluated the sex ratio and the morphological characteristics of Rufous Gnateaters (Conopophaga lineata (Wied, 1831)) in small and large forest fragments in Minas Gerais, Brazil. Birds (n = 89) were sexed by plumage characteristics and molecular markers. The molecular analysis showed that plumage is not a totally reliable method for sexing Rufous Gnateaters. We observed that sex ratio did not differ between large and small forest fragments, but birds in small fragments had larger wings and tarsus. Wing and tarsus changes may affect the movement ability of individuals within and among forest fragments. In conclusion, Rufous Gnateaters have been able to survive in both small and large Atlantic rain forest fragments without altering their sex ratio, but morphological changes can be prejudicial to their long term survival.

2375 downloads

DNA barcoding of Brazilian sea turtles (Testudines)
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Vargas, Sarah M.

; Araújo, Flávia C.F.

; Santos, Fabrício R.

Genetics and Molecular Biology

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2009, Volume 32 N. 3 Pages 608 - 612

Abstract: En | Text: En | PDF: En

Five out of the seven recognized species of sea turtles (Testudines) occur on the Brazilian coast. The Barcode Initiative is an effort to undertake a molecular inventory of Earth biodiversity. Cytochrome Oxidase c subunit I (COI) molecular tags for sea turtle species have not yet been described. In this study, COI sequences for the five species of sea turtles that occur in Brazil were generated. These presented widely divergent haplotypes. All observed values were on the same range as those already described for other animal groups: the overall mean distance was 8.2%, the mean distance between families (Dermochelyidae and Cheloniidae) 11.7%, the mean intraspecific divergence 0.34%, and the mean distance within Cheloniidae 6.4%, this being 19-fold higher than the mean divergence observed within species. We obtained species-specific COI barcode tags that can be used for identifying each of the marine turtle species studied.

3984 downloads

Reading the human Y chromosome: the emerging DNA markers and human genetic history
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Santos, Fabrício R.

; Tyler-Smith, Chris

Brazilian Journal of Genetics

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1996, Volume 19 N. 4 Pages 665 - 670

Abstract: En | Text: En | PDF: En

Reading the human Y chromosome: the emerging DNA markers and human genetic history.

2415 downloads

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