Abstract The objectives of this study were to assess linkage disequilibrium (LD) and selection-induced changes in single nucleotide polymorphism (SNP) frequency, and to perform association mapping in popcorn chromosome regions containing quantitative trait loci (QTLs) for quality traits. Seven tropical and two temperate popcorn populations were genotyped for 96 SNPs chosen in chromosome regions containing QTLs for quality traits. The populations were phenotyped for expansion volume, 100-kernel weight, kernel sphericity, and kernel density. The LD statistics were the difference between the observed and expected haplotype frequencies (D), the proportion of D relative to the expected maximum value in the population, and the square of the correlation between the values of alleles at two loci. Association mapping was based on least squares and Bayesian approaches. In the tropical populations, D-values greater than 0.10 were observed for SNPs separated by 100-150 Mb, while most of the D-values in the temperate populations were less than 0.05. Selection for expansion volume indirectly led to increase in LD values, population differentiation, and significant changes in SNP frequency. Some associations were observed for expansion volume and the other quality traits. The candidate genes are involved with starch, storage protein, lipid, and cell wall polysaccharides synthesis.

Os objetivos deste trabalho foram estimar os parâmetros de adaptabilidade e estabilidade em populações de milho-pipoca relacionadas por ciclos de seleção, inferir sobre a eficiência dos métodos de seleção pelos quais as populações foram obtidas e avaliar os efeitos da seleção sobre os parâmetros de adaptabilidade e estabilidade. Vinte e cinco populações e três testemunhas comerciais foram avaliadas em 14 ensaios realizados nos anos agrícolas de 2003/2004, 2004/2005, 2006/2007, 2008/2009 e 2009/2010, em sete locais. Utilizou-se o delineamento experimental de blocos completos ao acaso, com quatro repetições. Foram analisadas a capacidade de expansão, avaliada em forno de microondas e na pipocadora Metric Weight Volume Tester (MWVT), além da produtividade de grãos. Utilizou-se o método de adaptabilidade e estabilidade de Eberhart & Russell. Em geral, as populações base e melhoradas apresentaram previsibilidade de comportamento em resposta às variações de ambiente. A seleção pode provocar mudanças nos padrões de adaptabilidade e estabilidade, e as diferentes estratégias de seleção empregadas na obtenção das populações apresentaram eficiências semelhantes

The objectives of this work were to estimate the adaptability and stability parameters of popcorn populations related through cycles of selection, to infer about the efficiency of the selection methods by which the populations were obtained and to assess the effects of selection on the parameters of adaptability and stability. Twenty-five populations and three commercial controls were evaluated in 14 trials carried out in the 2003/2004, 2004/2005, 2006/2007, 2008/2009 and 2009/2010 growing seasons, in seven locations. The experimental design used was randomized complete blocks with four replicates. The expansion volume, evaluated in a microwave oven and in the Metric Weight Volume Tester (MWVT), as well as grain yield were analyzed. The Eberhart & Russell adaptability and stability method was used. In general the initial and improved populations showed predictable performance in response to changes in the environment. Selection can cause changes in the adaptability and stability patterns, and the different selection strategies performed in order to obtain the populations showed similar efficiencies