ABSTRACT The objective was to develop selection indexes for Nellore cattle raised in full-cycle production system in the Brazilian Pantanal. The resulting offspring are retained as replacements or sold at two years of age. Preliminary analyses explored effects of scale on economic values (EV). However, given the available data, these effects were very small. Presented herein are results from a simulated system consisting of 5,000 cows with all animals maintained on pasture as is typical in Pantanal. The EV were determined by approximating the partial derivatives of the profit function, changing one trait at a time, by one unit, while keeping the other traits constant. Traits in the breeding objective were mature cow weight, direct and maternal weaning weight, postweaning average daily gain, subcutaneous fat depth, longissimus muscle area, and stayability. Economic values were calculated on the basis of number of animals (per head), number of animal units, and arroba of carcasss weight. Regardless of the basis, maternal weaning weight and subcutaneous fat depth made negligible contributions to the breeding objective. Proportions of variation in the breeding objectives (per head, per animal unit, per arroba) explained by cow weight, direct weaning weight, postweaning average daily gain, stayability, and longissimus muscle area were: 13, 13, 17; 6, 1, 5; 3, 3, 4; 67, 67, 61; and 11, 17, 13, respectively. These indexes may aid Nellore breeders in their selection decisions, thus facilitating the genetic progress and increased productivity and profitability of Pantanal herds.

Resumo O crescimento alométrico de raças de suínos naturalizados (Nilo, Piau, Moura e Monteiro), machos e fêmeas, foi avaliado em relação à altura do quadril, comprimento do focinho e comprimento da cabeça, usando-se a equação alométrica. As medidas do corpo geralmente apresentam um crescimento mais tardio em relação ao comprimento do focinho e precocemente em relação ao comprimento da cabeça e altura do quadril. Ao comparar as raças de suínos, as fêmeas da raça Moura apresentaram características relacionadas com o crescimento muscular (circunferência torácica, comprimento do corpo e diâmetro longitudinal) mais tardiamente ao comprimento da cabeça. Fêmeas Nilo apresentaram características do comprimento do ombro, comprimento da garupa e a distância interesquiática mais precoce em relação ao comprimento do focinho. Foram encontradas diferenças entre a raça e o sexo no tempo de desenvolvimento para as diferentes partes do corpo, mostrando que os sistemas de criação e utilização desses animais devem ser específicos para cada raça.

Abstract The allometric growth of male and female naturalized pig breeds (Nilo, Piau, Moura, and Monteiro) was evaluated regarding hip height, snout length, and head length using the allometric equation. Body measurements generally show later growth in relation to the snout length and earlier growth in relation to the head length and hip height. When comparing breeds of pigs, female Moura animals showed later growth of the characteristics linked to muscle (thoracic circumference, body length, and longitudinal diameter) than of head length. Nilo females showed characteristics such as shoulder length, rump length and interschiadic distance earlier than snout length. There were differences between the breed and gender in terms of development times for the different parts of the body, showing that breeding systems and use of these animals have to be specific for each breed.

ABSTRACT This study was intended to evaluate body size structure and growth parameters of crossbred heifers fed at four nutritional levels to achieve puberty earlier. Animals were classified depending on their level of crossing between Nelore and Hereford and subjected to four nutritional levels (kg day−1) as follows: 0.5 (light; n = 32), 0.75 (medium; n = 32), 1.00 (high; n = 29), and 1.25 (very high; n = 27). Heifers at puberty and at weaning were individually classified for growth parameters. The fat thickness and longissimus muscle area throughout the experimental period were determined by ultrasonography. The height, heart girth, frame, and weight:height ratio were variables used to evaluate body traits. Univariate analysis of variance using the GLIM MIXED procedure os SPSS was performed and the significance level was set at 0.05. Age and body weight at puberty were 388±1.9 days and 331.4±1.3 kg, respectively. Body condition score demonstrated an interaction between nutritional level and crossbred degree. Heifers with the highest degree of Nelore had higher fat thickness and lower weight:height ratio compared with other racial groups at puberty. Pearson correlation coefficient showed a negative association for body condition score (−0.34) and fat thickness (−0.58) compared with age at puberty. The increased fat thickness at younger ages at puberty was observed in all racial groups. The increased weight:height ratio at younger ages at puberty was observed in all racial groups. We observed higher values for a frame in animals at the higher level of supplementation. There is a greater correlation between live weight gain and phenotypic traits during weaning to achieve puberty at an earlier age in crossbred heifers.

ABSTRACT This study aimed to estimate heritability, genetic, and residual correlations between reproductive traits such as age at first calving, calving interval, dry period, and first service period and linear type traits measured in Holstein cows born between the years 1990 and 2008 in Brazil. The (co)variance components were estimated by restricted maximum likelihood, using the MTDFREML software. The heritability for reproductive traits and linear-type traits ranged from 0.02 to 0.03 and from 0.07 to 0.40, respectively. Estimates of genetic correlations between reproductive and linear-type traits ranged from -0.23 (top line) to 0.28 (angularity) to age at first calving, from -0.54 (final score) to 0.34 (foot angle) to calving interval, from -0.23 (angularity) to 0.56 (stature) to dry period, and from -0.52 (final score) to 0.36 (height udder) to first service period. Direct selection for any of the reproductive traits implies low genetic gains by virtue of their low heritabilities. Among the linear-type traits, the final score, chest width, top line, angularity, teat length, udder attachment, rear teat placement were highlighted as good auxiliary traits to improve reproductive efficiency of Holstein cows in Brazil. The simultaneous selection for reproductive and linear-type traits can lead a higher genetic progress in the reproductive traits.

Resumo O objetivo deste trabalho foi verificar o ganho em confiabilidade dos valores genéticos estimados (VGE), quando os modelos de regressão aleatória são aplicados em lugar dos modelos convencionais de lactação até os 305 dias, tendo-se utilizado registros de produção de gordura e proteína de bovinos da raça Holandesa no Brasil, para futuras avaliações genéticas. O conjunto de dados continha 262.426 registros de produção de gordura e proteína no dia do controle e 30.228 registros de produção acumulada de gordura e proteína até os 305 dias de lactação. Aplicaram-se modelos de regressão aleatória unicaracterística, com os polinômios de Legendre, e modelos unicaracterística de lactação aos 305 dias. A herdabilidade estimada para as produções até os 305 dias pelos modelos de lactação foi 0,24 (gordura) e 0,17 (proteína), e, pelos modelos de regressão aleatória, foi 0,20 (gordura) e 0,21 (proteína). Correlações de Spearman dos VGEs entre os modelos de lactação e de regressão aleatória, para a produção aos 305 dias, variaram de 0,86 a 0,97 e 0,86 a 0,98 (touros) e de 0,80 a 0,89 e 0,81 a 0,86 (vacas), quanto à gordura e à proteína, respectivamente. O aumento médio em confiabilidade dos VGEs para a produção aos 305 dias variou de 2 a 16% (gordura) e de 4 a 26% (proteína), em touros, e variou de 24 a 38% (gordura e proteína) em vacas, o que é superior àquela obtida pelos modelos de lactação. Os modelos de regressão aleatória com uso dos polinômios de Legendre melhorarão a avaliação genética de bovinos da raça Holandesa no Brasil, em razão do aumento de confiabilidade dos VGEs, em comparação aos modelos de lactação de 305 dias.

Abstract The objective of this work was to verify the gain in reliability of estimated breeding values (EBVs), when random regression models are applied instead of conventional 305-day lactation models, using fat and protein yield records of Brazilian Holstein cattle for future genetic evaluations. Data set contained 262,426 test-day fat and protein yield records, and 30,228 fat and protein lactation records at 305 days from first lactation. Single trait random regression models using Legendre polynomials and single trait lactation models were applied. Heritability for 305-day yield from lactation models was 0.24 (fat) and 0.17 (protein), and from random regression models was 0.20 (fat) and 0.21 (protein). Spearman correlations of EBVs, between lactation models and random regression models, for 305-day yield, ranged from 0.86 to 0.97 and 0.86 to 0.98 (bulls), and from 0.80 to 0.89 and 0.81 to 0.86 (cows), for fat and protein, respectively. Average increase in reliability of EBVs for 305-day yield of bulls ranged from 2 to 16% (fat) and from 4 to 26% (protein), and average reliability of cows ranged from 24 to 38% (fat and protein), which is higher than in the lactation models. Random regression models using Legendre polynomials will improve genetic evaluations of Brazilian Holstein cattle due to the reliability increase of EBVs, in comparison with 305-day lactation models.

RESUMO: Objetivou-se verificar a presença das interações genótipos ambientes (IGA) para o peso ajustado aos 365 dias de idade (P365) na raça Tabapuã na região Nordeste do Brasil usando modelos de normas de reação (NR). O modelo normas de reação com variância residual homogênea e um passo proporcionou melhor ajuste aos dados pelos critérios de informação da deviance, deviance baseada na ordenada preditiva condicional e da deviance baseada nos fatores de Bayes. As estimativas de herdabilidade direta e materna, para o modelo animal, foram 0,17±0,04 e 0,07±0,03, respectivamente. As herdabilidades diretas para modelo normas de reação no ambiente de baixo e alto manejo foram de 0,21±0,06 e0,70±0,04, respectivamente. As correlações entre a inclinação e o intercepto da norma de reação foram de 0,68±0,10 e 0,96±0,06, para o efeito direto e materno, indicando que os animais com maiores valores genéticos respondem positivamente à melhoria do ambiente, especialmente para o efeito materno. As correlações de Spearman entre as classificações dos reprodutores variaram de 0,14 a 0,94 nos diferentes ambientes e modelos. Os valores genéticos da maioria dos animais apresentam-se robustos à variação ambiental, no entanto quando considera os reprodutores com maior número de filhos, verifica-se a presença de IGA.

ABSTRACT: The objective of this work was to verify the presence of genotype-environment interactions (GEI) on the weight adjusted to 365 days of age (W365) for Tabapua cattle in the Northeast of Brazil, using reaction norm (RN) models. The reaction norm model with homogeneous residual variance and 1-step provided the best fit to the data by the criteria information of deviance, deviance based on the conditional predictive ordinate and deviance based on the Bayes factors. Direct and maternal heritability estimates for the animal model were 0.17±0.04 and 0.07±0.03, respectively. The direct heritability for model reaction norm in the low and high management environment were 0.21±0.06 and 0,70±0.04, respectively. The correlations between the slope and intercept of the reaction norm were 0.68±0.10 and 0.96±0.06 for the direct and maternal effect, indicating that the animals with high genetic values respond positively to environment improvements, especially for the maternal effect. The Spearman correlations between the sire classifications ranged from 0.14 to 0.94 in the different environments and models. Genetic values of most animals were robust to environmental variation, however, considering the sires with the highest number of progeny, there is the presence of GEI.

Longevity is a desirable trait in the dairy industry because of its relationship to profitability. The aim of this study was to estimate genetic parameters for longevity measurements related to productive life, or life in the herd, and linear type traits of Brazilian Holstein cows born between the years 1990 and 2008. The (co) variance components were estimated by the restricted maximum likelihood method. The heritability for measurements of longevity and linear type traits ranged from 0.05 to 0.07 and 0.08 to 0.39, respectively. The genetic correlations between measurements of longevity and linear type traits ranged from -0.39 to 0.31. Direct selection for longevity does not necessarily lead to long-lived cows, due to low heritability. Indirect genetic selection for udder depth, bone quality, udder height, rear teat placement and conformation traits showed the highest genetic correlations with measurements of time between birth and last milk record and time from first calving to last milk record.

The objective of this study was to evaluate the genotype-environment interaction (GEI) in the body weight adjusted to 550 days of age (W550) of Polled Nellore cattle raised in Northeastern Brazil using reaction norms (RN) models. Hierarchical RN models included fixed effects for age of cow (linear and quadratic) and random effects for contemporary groups (CG) and additive genetic RN level and slope. Four RN hierarchical models (RNHM) were used. The RNHM2S uses the solutions of contemporary groups estimated by the standard animal model (AM) and considers them as environmental level for predicting the reaction norms and the RNHM1S, which jointly estimate these two sets of unknowns. Two versions were considered for both models, one with a homogeneous (Hm) and another with a heterogeneous (He) residual variance. The one-step homogeneous residual variance model (RNHM1SHm) offered better adjustment to the data when compared with other models. For the RNHM1SHm model, estimates of additive genetic variance and heritability increased with environment improvement (260.75±75.80 kg2 to 4298.39±356.56 kg2 and 0.22±0.05 to 0.82±0.01, for low- and high-performance environments, respectively). High correlation (0.97±0.01) between the intercept and the slope of RN shows that animals with higher genetic values respond better to environment improvement. In the evaluation of breeding sires with higher genetic values in the various environments using Spearman's correlation, values between 0 and 0.98 were observed, pointing to high reclassification, especially among genetic values obtained by the animal model in comparison with those obtained via RNHM1SHm. The existence of GEI is confirmed, and so is the need for specific evaluations for low, medium and high level production environments.

A genealogical analysis of registered Pantaneiro horses was carried out with 3647 males and 6794 females. Of these animals, 50.66% had identified sires and 48.86% identified dams. The number of pedigrees increased over the generations, with higher registration of parents of sires than dams. Two municipalities are responsible for almost 70% of all registers: i) Poconé (Mato Grosso State), where the headquarters of the breeders association is located and ii) Corumbá (Mato Grosso do Sul State), where EMBRAPA Pantanal conducts its research. The mean inbreeding was 0.04% and average relatedness was 0.13%. Mean generation interval was 8.20 years. There is moderate to high genetic differentiation between farms (15% of total genetic variation) while between municipalities there is little differentiation. Wright's fixation statistics were calculated and F IS (inbreeding coefficient of individuals relative to the subpopulation) values indicate some heterozygosity between farms but not municipalities, with overall F IT (inbreeding coefficient of individuals relative to the total population) close to zero. The municipalities with the highest number of animals (Poconé and Corumbá) import relatively fewer sires (45 and 67% respectively). Genetic indices from genealogical data on the Pantaneiro horse population show that inbreeding is under control.Future breeding plans should include germplasm exchange between municipalities. The conservation program for the Pantaneiro horse has been shown to be successful but careful planning is needed in the future to avoid inbreeding and changes in important breed traits given the increasing interest in the use of the breed in sporting competitions.

O objetivo deste trabalho foi avaliar a interação genótipo × ambiente (IGA) quanto ao peso ajustado aos 365 dias de idade, em bovinos da raça Nelore Mocha do Nordeste do Brasil, por meio de modelos de norma de reação, via regressão aleatória com abordagem bayesiana. Os modelos analisados incluíram o efeito fixo de idade da vaca (linear e quadrático) e os efeitos aleatórios genético aditivo e de grupo de contemporâneos. O modelo de norma de reação com variância residual homogênea e um passo (MHNRHO1P) proporcionou melhor ajuste aos dados do que os modelos com variância residual heterogênea e o modelo animal padrão (MA). As estimativas de variância genética (64,41±13,24 kg² a 842,31±58,29 kg²) e herdabilidade (0,11±0,01 a 0,63±0,02) aumentaram com a melhoria do gradiente ambiental. As correlações de Spearman variaram de 0,69 a 0,99, entre as classificações dos reprodutores com maiores valores genéticos nos MA e MHNRHO1P, nos diferentes ambientes, o que indica alteração na classificação, especialmente dos valores genéticos obtidos pelo MA nos ambientes superiores. A identificação desse nível de IGA torna necessárias as avaliações específicas dos indivíduos e rebanhos para os ambientes de baixo, médio e alto nível de produção.

The objective of this work was to evaluate the genotype × environment interaction (GEI), for the adjusted weight at 365 days of age, in Polled Nellore cattle from Northeastern Brazil, by using reaction norm models through random regression in a Bayesian approach. The analyzed models included the fixed effect of cow's age (linear and quadratic), and the genetic additive and contemporary group random effects. The one-step reaction norm models with homogeneous residual variance (RNHM1sHm) yielded better data adjustments than the models with heterogeneous residual variance, and the standard animal model (AM). The estimates of genetic variance (64.41±13.24 kg² to 842.31±58.29 kg²) and heritability (0.11±0.01 to 0.63±0.02) increased as the environmental gradient improved. Spearman correlation values ranged from 0.69 to 0.99, among the classification of breeders with the highest breeding genetic values in AM and RNHM1sHm, in distinct environments, indicating changes in classification, particularly in the genetic values obtained by AM in high-quality environments. The identification of such degree of GEI requires that specific evaluation of individuals and herds are performed for environments of low, medium and high production.

Data from 26,558 Holstein cows in 802 herds were used to estimate genetic, residual and phenotypic parameters for 22 type traits. The model included the fixed effects of herd-year, period of classification, classifier, stage of lactation and age of cows at calving (covariate) and random genetic and residual effects. Heritability for type traits ranged from 0.10 to 0.39. The genetic variability in these traits suggested the possibility for moderate genetic gains through selection. The phenotypic correlations were moderated, mainly in the section conformation. Genetic correlations between type traits ranged from -0.44 to 0.85. High genetic correlations indicated that breeding programs could be successful without including all type traits. The selection for the final score at the expense of other traits must be performed with restraint, because in the long term, this may promote undesirable changes in some type traits.

Objetivou-se estimar parâmetros genéticos de características de carcaça, cortes de carcaça, qualidade de carne e desempenho de suínos em uma população F2 (Piau x linhagem comercial), para melhor se compreender a herança e a associação entre essas características. Para obter as estimativas de herdabilidades e correlações genéticas foi utilizado um modelo animal unicaracterístico e bicaracterístico, respectivamente, e os parâmetros foram estimados a partir dos componentes de variância e covariância, obtidos pelo método da máxima verossimilhança restrita por meio do programa MTDFREML. As herdabilidades estimadas, em modelo unicaracterístico, variaram de 0,10 a 0,43 para o grupo de características de carcaça, de 0,07 a 0,47 para cortes de carcaça, de 0,14 a 0,40 para qualidade de carne e de 0,18 a 0,86 para características de desempenho. As correlações genéticas estimadas em modelo bicaracterístico foram altas para algumas características, o que pode ser indicativo de que estas são controladas pelos mesmos genes ou genes ligados. Estudos futuros de mapeamento dos locos de características quantitativas, nesta população permitirão uma melhor compreensão das causas das correlações genéticas existentes entre as características, bem como determinar em qual região cromossômica localiza-se os locos de características quantitativas.

The aim of this work was to estimate genetic parameters for carcass, carcass cuts, meat quality and performance traits in an F2 swine population (Piau x commercial strain) in order to understand the inheritance of the traits and the association among them. Heritability estimates and genetic correlations were obtained using univariate and bivariate animal models, respectively, and (co)covariance components were obtained by means of restricted maximum likelihood analyses using the software MTDFREML. The heritability estimates using single trait model ranged from 0.10 to 0.43 for carcass, 0.07 to 0.47 for carcass cuts, 0.14 to 0.40 for meat quality and 0.18 to 0.86 for performance traits. The genetic correlation estimates using bi-trait model were high for several traits, showing that they are controlled by the same genes or linked genes. These results suggest that a better understanding of the genetic correlation among the traits, as well as, the quantitative trait loci position can be obtained by mapping studies in this population.

Three production systems for sheep (Low - L, Medium - M and High - H technology), with increasing technological levels, were studied under conditions in the Center-west of Brazil, to determine economic weights and selection indices of important traits. Receipts and costs were simulated using an economic simulator to calculate the structure of the operational costs. Only characteristics that were responsible for more than 10% of the profit were studied, which included: number of weaned lambs, food consumption (ewe and lamb), weight of carcass and weight of female lambs sold for reproduction. Regardless of the index used (profitability or yield) or system (L, M or H), the economic weights are larger for the number of lambs weaned per ewe. With improvement in the technology used within the production system (H to L) the importance of this trait becomes less important. Lamb growth increased and weight of female for slaughter decreased in importance in higher technology systems. Changes in herd structure had little influence on economic values, whereas (co)variances were important sources of change in selection indices.

Objetivou-se obter os índices de diversidade genética para o SNP (single nucleotide polymorphism) do íntron 4 do gene da osteopontina (OPN) para 434 animais (87 touros e 347 vacas) participantes do Teste de Progênie da raça girolando no Brasil. Para a amplificação, foram utilizados primers descritos para a raça holandesa, e a diferenciação dos alelos C/T desse SNP foi obtida por meio da técnica de PCR-RFLP. As frequências genotípicas TT (52,53%), CT (38,71%) e CC (8,76%) e as frequências alélicas de T (71,9%) e C (28,1%) indicam que a população encontra-se em Equilíbrio de Hardy-Weinberg (EHW). Apesar de o loco do gene OPN estar em EHW, a frequência superior do alelo T do SNP nesses animais pode sugerir uma tendência de fixação do alelo T na raça. Não foi observada diferenciação entre o grupo de touros e vacas (F ST = -0,018), corroborando a estimativa de equilíbrio da população. Considerando os valores estimados pelo F IS (0,043), é possível que ocorram altos números de indivíduos homozigotos para o alelo T observados na população, em virtude da provável herança desse alelo vindo da raça zebuína, e não a endogamia. Assim, para melhor caracterização do polimorfismo do gene OPN, devem ser realizadas avaliações em maior número de animais, uma vez que só foram avaliados animais participantes do teste de progênie.

The objective was to obtain the indices of genetic diversity for the SNP (single nucleotide polymorphism) of the 4 intron osteopontin gene (OPN) for 434 animals (87 bulls and 347 cows) participants in the Teste de Progênie da raça girolando (Girolando Progeny Test) in Brazil. For amplification, primers used were described for the Holstein breed, and differentiation of alleles C/T SNP that was obtained by PCR-RFLP. Genotype frequencies of TT (52.53%), CT (38.71%) and CC (8.76%) and allele frequencies of T (71.9%) and C (28.1%) indicate that the population is in Hardy-Weinberg principle (HWP). Although the OPN gene locus is in HWP, the higher frequency of allele T of SNP in these animals may suggest a setting-trend of allele T in the race. No difference was observed between the group of bulls and cows (F ST = -0.018), supporting the estimate of population balance. Considering the values estimated by the F IS (0.043), it is likely that high numbers of individuals homozygous for the T allele observed in the population occur because of possible inheritance of this allele coming from the zebu breed, rather than inbreeding. Thus, to better characterize the OPN gene polymorphism, assessments in a larger number of animals must be performed, since only animals that participated in the Progeny Test were assessed.

Os registros de produção de leite no dia do controle das três primeiras lactações de 25,5 mil vacas da raça Holandesa foram utilizados para estimar parâmetros genéticos para produção de leite usando duas alternativas de definição da regressão fixa dos modelos de regressão aleatória (MRA). Os polinômios de Legendre de ordens 4 e 5 foram usados para modelar as regressões das curvas fixas (definidas com base nas médias das produções de leite no dia do controle da população ou de múltiplas sub-populações formadas pelo agrupamento de animais que pariram na mesma idade e estação do ano) e aleatórias (genética aditiva e de ambiente permanente) de lactação. Os critérios de informação de Akaike (AIC) e Bayesiano (BIC) indicaram os modelos que consideraram múltiplas regressões das curvas fixas de lactação como os que melhor se ajustaram aos registros de produção de leite da primeira lactação e os modelos que utilizaram uma única regressão da curva fixa, como os melhores para ajuste das segunda e terceira lactações. As herdabilidades para produção de leite ao longo da lactação não variaram entre modelos, entretanto variaram de 0,22 a 0,34; 0,11 a 0,21 e 0,10 a 0,20, respectivamente, para as três primeiras lactações. Semelhantemente às estimativas de herdabilidade os valores das estimativas de correlações genéticas não variaram entre modelos. O uso de uma ou de múltiplas regressões das curvas fixas de lactação pelos MRA não influencia na estimação de parâmetros genéticos para as produções de leite ao longo das lactações de vacas da raça Holandesa.

Records of test-day milk yields of the first three lactations of 25,500 Holstein cows were used to estimate genetic parameters for milk yield by using two alternatives of definition of fixed regression of the random regression models (RRM). Legendre polynomials of fourth and fifth orders were used to model regression of fixed curve (defined based on averages of the populations or multiple sub-populations formed by grouping animals which calved at the same age and in the same season of the year) or random lactation curves (additive genetic and permanent enviroment). Akaike information criterion (AIC) and Bayesian information criterion (BIC) indicated that the models which used multiple regression of fixed lactation curves of lactation multiple regression model with fixed lactation curves had the best fit for the first lactation test-day milk yields and the models which used a single regression of fixed curve had the best fit for the second and third lactations. Heritability for milk yield during lactation estimates did not vary among models but ranged from 0.22 to 0.34, from 0.11 to 0.21, and from 0.10 to 0.20, respectively, in the first three lactations. Similarly to heridability estimates of genetic correlations did not vary among models. The use of single or multiple fixed regressions for fixed lactation curves by RRM does not influence the estimates of genetic parameters for test-day milk yield across lactations.