RESUMO: O tomate (Solanum lycopersicum L.) é uma fruta rica em nutrientes e com alto teor de ácido glutâmico, tornando-o uma fonte adequada para a produção de ácido γ-aminobutírico (GABA) através da ação de bactérias ácido lácticas (BAL). As BAL desempenham um papel fundamental na fermentação láctica, melhorando o sabor e o valor nutricional dos produtos alimentares, contribuindo frequentemente para os seus benefícios para a saúde. Este estudo teve como objetivo isolar BAL produtoras de GABA de tomates e avaliar seu potencial para a produção de suco de tomate fermentado enriquecido com GABA. Os resultados indicam o isolamento de 15 cepas de BAL a partir de amostras de cinco tomates diferentes. Todas essas cepas demonstraram capacidade de produzir GABA, com níveis variando de 1,732 a 3,113 mg/mL, conforme determinado por cromatografia em camada delgada (CCD). Através de sequenciamento, a cepa promissora TO42, identificada como Weissella cibaria, foi selecionada para fermentação de suco de tomate. Além disso, o suco de tomate enriquecido com GABA foi fermentado com sucesso a 15 °Brix por 72 h, resultando no maior teor registrado de GABA e ácido láctico de 9.185 ± 0.398 mg/mL e 13.05 ± 1.56 g/L, respectivamente. RESUMO Solanum L. L glutâmico tornandoo tornando γaminobutírico γ aminobutírico (GABA BAL. . (BAL) láctica alimentares saúde 1 diferentes 1732 732 1,73 3113 3 113 3,11 mgmL mg mL CCD. CCD (CCD) sequenciamento TO42 TO cibaria disso Brix 7 h 9185 9 185 9.18 0398 0 398 0.39 1305 13 05 13.0 156 56 1.5 gL g g/L respectivamente (BAL 173 73 1,7 311 11 3,1 (CCD TO4 918 18 9.1 039 39 0.3 130 13. 5 1. 17 1, 31 3, 91 9. 03 0.

ABSTRACT: Tomatoes (Solanum lycopersicum L.) are nutrient-rich fruits with a high glutamic acid content, making them a suitable source for producing γ-aminobutyric acid (GABA) through the action of lactic acid bacteria (LAB). LAB plays a pivotal role in lactic fermentation, enhancing the taste and nutritional value of food products, often contributing to their health benefits. This study isolated GABA-producing LAB from tomatoes and assessed their potential for producing GABA-enriched fermented tomato juice. The results indicated the isolation of 15 LAB strains from the samples of five different tomatoes. All of these strains demonstrated the capability to produce GABA, with levels ranging from 1.732 to 3.113 mg/mL, as determined using thin-layer chromatography (TLC). Through sequencing, the promising strain TO42, identified as Weissella cibaria, was selected for tomato juice fermentation. Furthermore, GABA-enriched tomato juice was successfully fermented at 15 °Brix for 72 h, resulting in the highest recorded GABA and lactic acid content of 9.185 ± 0.398 mg/mL and 13.05 ± 1.56 g/L, respectively. ABSTRACT Solanum L. L nutrientrich nutrient rich γaminobutyric γ aminobutyric (GABA LAB. . (LAB) fermentation products benefits GABAproducing GABAenriched enriched 1 1732 732 1.73 3113 3 113 3.11 mgmL mg mL thinlayer thin layer TLC. TLC (TLC) sequencing TO42 TO cibaria Furthermore Brix 7 h 9185 9 185 9.18 0398 0 398 0.39 1305 13 05 13.0 156 56 1.5 gL g g/L respectively (LAB 173 73 1.7 311 11 3.1 (TLC TO4 918 18 9.1 039 39 0.3 130 13. 5 1. 17 31 3. 91 9. 03 0.

Abstract Introduction. Chickpea has been considered a restricted host species for nodulation, although recent studies describe a greater bacterial diversity associated with the crop to increase the knowledge about this symbiosis in orden to obtain efficient isolates in its contribution. Objective. To characterize and identify an isolate obtained from chickpea plant nodules and evaluate its effectiveness under field conditions. Materials and methods. The research was conducted in the laboratories of two centers: the Institute of Fundamental Research in Tropical Agriculture “Alejandro de Humboldt,” Cuba, and the National Center for Genetic Resources, Mexico, as well as under field conditions in two campaigns during the years 2018 and 2020 to demonstrate its effectiveness in crop interaction in the first center. The isolate R3 was taxonomically identified through the sequencing of four genes. For laboratory experiments, a completely randomized design was used, while plant trials were conducted under a randomized block design. The results were subjected to analysis of variance, and means were compared using the Tukey test (p<0.05). Results. The isolate R3 showed variability in terms of its morpho-physiological and biochemical characteristics. Furthermore, it exhibited significant differences compared to the other treatments in the growth and yield indicators evaluated in chickpea. Conclusions. Rhizobium pusense associated with chickpea nodules was identified for the first time in Cuba. The strain demonstrates growth at pH levels between 5.5 and 9.0 and temperature ranges from 29 °C to 38 °C, indicating its tolerance to these factors. Its inoculation in chickpea stimulates nodule formation and increased yield-related variables.

Resumen Introducción. El garbanzo se consideró durante muchos años una especie de hospedero restringido para la nodulación, aunque estudios recientes describen una mayor diversidad bacteriana asociada al cultivo que permita incrementar los conocimientos acerca de esta simbiosis para obtener aislados eficientes en su contribución. Objetivo. Caracterizar e identificar un aislado obtenido a partir de nódulos de plantas de garbanzo y evaluar su efectividad en condiciones de campo. Materiales y métodos. La investigación se desarrolló en los laboratorios de dos centros: Instituto de Investigaciones Fundamentales en Agricultura Tropical “Alejandro de Humboldt”, Cuba y en el Centro Nacional de Recursos Genéticos, México, así como en condiciones campo en dos campañas durante los años 2018 y 2020, para demostrar su efectividad en la interacción del cultivo en el primer centro. El aislado R3 se identificó a nivel taxonómico mediante la secuenciación de cuatro genes. Para los experimentos en condiciones de laboratorio se utilizó un diseño completamente aleatorizado, mientras que los ensayos con plantas se realizaron bajo un diseño de bloques al azar. Los resultados fueron sometidos a un análisis de varianza y las medias se compararon según el test de Tukey (p < 0,05). Resultados. El aislado R3 mostró variabilidad en cuanto a sus características morfo-fisiológico y bioquímicas. Además, tuvo respuesta con diferencias significativas con respecto al resto de los tratamientos en los indicadores de crecimiento y rendimiento evaluados en el garbanzo. Conclusión. Se identificó por primera vez en Cuba Rhizobium pusense asociado a nódulos de garbanzo. La cepa mostró un crecimiento positivo a pH entre 5,5 y 9,0 y rangos de temperatura desde 29 ºC hasta 38 ºC, lo que evidencia su tolerancia a estos factores. Su inoculación en garbanzo estimuló la formación de nódulos e incrementó variables del rendimiento.

Abstract Introduction: Chacón-Monge et al. (2024) sought to test the accuracy of DNA barcoding for species identification in Pacific Central American shallow water echinoderms. They used cytochrome c oxidase I (COI) sequences derived from new material collected as part of the BioMar-ACG project in Costa Rica. Using their set of 348 echinoderm sequences, they compared species identification results from two online platforms: the National Center for Biotechnology Information (NCBI) GenBank using the nucleotide Basic Local Alignment Search Tool (BLASTn), and the Barcode of Life Data Systems (BOLD) Identification Engine. Objective: The present article is a response to their results and conclusions. Methods: We reinterpreted the results from the authors’ Appendix 2 to enable an objective comparison between the BOLD Identification Engine and BLASTn in GenBank. Results: While the authors found that both platforms were limited by the number of reference sequences available in their respective databases, they concluded that GenBank outperformed BOLD for identification; however, we identify several methodological flaws in their analysis. These include pseudoreplication amongst query sequences, contaminated sequences stemming from sampling errors, and a lack of standardization when interpreting results from the two platforms. Their assessment of the BOLD Identification Engine was also limited by improper selection of a reference database. Conclusion: Addressing these errors, we reinterpret their results and demonstrate that there is no difference in performance between the two platforms.

Resumen Introducción: Chacón-Monge et al. (2024) intentaron probar la precisión de los códigos de barras de ADN para identificar especies de equinodermos de aguas poco profundas del Pacífico Centroamericano. Para ello, utilizaron secuencias de citocromo c oxidasa I (COI) provenientes de material recolectado recientemente como parte del proyecto BioMar-ACG en Costa Rica. Utilizando 348 secuencias de equinodermos, compararon los resultados de identificación de especies de dos plataformas en línea: GenBank del Centro Nacional de Información Biotecnológica (NCBI) empleando la herramienta de búsqueda de alineación local básica de nucleótidos (BLASTn) y la herramienta de identificación del Sistema de Datos del Código de Barras de la Vida (BOLD). Objetivo: El presente artículo es una respuesta a sus resultados y conclusiones. Métodos: Reinterpretamos los resultados presentados por los autores en Apéndice 2 para comparar objetivamente el sistema de identificación de BOLD y el de BLASTn en GenBank. Resultados: Si bien los autores encontraron que ambas plataformas estaban limitadas por la cantidad de secuencias de referencia disponibles en sus bases de datos, concluyeron que GenBank superó a BOLD en la identificación de especies; sin embargo, notamos varias fallas metodológicas en su análisis. Estas incluyeron la pseudorreplicación entre las secuencias consultadas, el uso de secuencias contaminadas derivadas de errores de muestreo y falta de estandarización al interpretar los resultados de las dos plataformas. Su evaluación del sistema de identificación de BOLD se vio limitada por la selección inadecuada de una base de datos de referencia. Conclusión: Teniendo en cuenta estos errores, reinterpretamos sus resultados y demostramos que no existe una diferencia significativa en el rendimiento de ambas plataformas.

Abstract Introduction: Anoectochilus formosanus is a highly valuable herb known for its efficacy in treating a wide range of diseases. However, the current methods used to differentiate this species from others within the same genus are not effective due to the high similarity in morphological characteristics and DNA barcode sequences among these species. Objective: To characterize the chloroplast (cp) genome to distinguish A. formosanus at species or isolation levels. Methods: The complete cp genome was sequenced using next-generation sequencing technology, annotated, and compared with published cp genomes of various species within the Anoectochilus genus. Results: The complete cp genome of A. formosanus is 152 658 bp in size, consisting of a large and small copy of 82 692 bp and 17 346 bp, respectively, separated by inverted repeats of 26 310 bp. Within the cp genome, there are a total of 141 genes, including 92 protein-coding genes, 10 rRNA genes, and 39 tRNA genes. This genome contains a total of 80 simple sequence repeats, with 50 long repeats. Through phylogenetic analysis, a close relationship was observed between A. formosanus in Vietnam and A. formosanus samples from China (NC_061756.1). However, genomic comparisons highlighted differences between the two cp genomes, specifically in their reverse repeat sequences. Conclusion: These findings reveal distinct variations in the cp genome of A. formosanus in Vietnam, offering valuable insights into the taxonomy, plant identification, breeding, and conservation programs related to this herb in Vietnam.

Resumen Introducción: Anoectochilus formosanus es una orquídea herbácea muy valiosa, conocida por su eficacia en el tratamiento de una amplia gama de enfermedades. Sin embargo, los métodos actuales utilizados para diferenciar esta especie de otras dentro del mismo género no son efectivos debido a la gran similitud en las características morfológicas y las secuencias de códigos de barras de ADN entre estas especies. Objetivo: Caracterizar el genoma del cloroplasto (cp) para distinguir A. formosanus a nivel de especie o de aislamiento. Métodos: El genoma completo del cp se secuenció utilizando tecnología de secuenciación de nueva generación, se anotó y se comparó con los genomas del cp publicados de varias especies del género Anoectochilus. Resultados: El genoma del cp completo de A. formosanus tiene un tamaño de 152 658 pb y consta de una copia grande y pequeña de 82 692 pb y 17 346 pb, respectivamente, separadas por repeticiones invertidas de 26 310 pb. Dentro del genoma del cp, hay un total de 141 genes, incluidos 92 genes codificadores de proteínas, 10 genes de ARNr y 39 genes de ARNt. Este genoma contiene un total de 80 repeticiones de secuencia simple, con 50 repeticiones largas. Mediante análisis filogenético, se observó una estrecha relación entre A. formosanus de Vietnam y muestras de A. formosanus de China (NC_061756.1). Sin embargo, las comparaciones genómicas resaltaron diferencias entre los dos genomas del cp, específicamente en sus secuencias de repetición invertida. Conclusión: Estos hallazgos revelan distintas variaciones en el genoma del cp de A. formosanus en Vietnam, lo que ofrece información valiosa sobre la taxonomía, la identificación de plantas, la reproducción y los programas de conservación relacionados con esta hierba en Vietnam.

Abstract Shrimp aquaculture has rapidly expanded in the last decades, representing an important economic activity worldwide; however, infections (bacterial and viral) are one of the biggest challenges in aquaculture activity. Acute Hepatopancreatic Necrosis Disease (AHPND) is a bacterial disease that affects shrimp farm ponds and occurs during the first 30 days after stocking in shrimp ponds, causing mortalities of up to 70 - 100 %. Microbiota has an important role in shrimp aquaculture and disease control. In the present study, pirA and pirB genes were amplified by PCR to confirm AHPND and non-AHPND in shrimp hepatopancreas; samples were sequenced using the MiSeq platform targeting the V3-V4 16S ribosomal (rRNA) hypervariable regions. Results demonstrated a diverse microbiota in the non-AHPND group, mainly composed of phyla Proteobacteria, Firmicutes, and Actinobacteria. Furthermore, Proteobacteria was the dominant phyla in the hepatopancreas infected with AHPND, while Firmicutes tended to decrease. Vibrio was the most abundant at the genus level, prevailing in some genera like Corynebacterium, Weissella, Lactobacillus, Photobacterium, and Geobacillus. Results suggest that AHPND causes dysbiosis in the hepatopancreatic microbiota, and the Firmicutes phylum could require to be restored under such scenario.

Resumen La producción acuícola de camarón se ha expandido rápidamente en las últimas décadas, convirtiéndose en una importante actividad económica a nivel mundial. Sin embargo, algunas infecciones bacterianas y virales son un gran desafío para esta actividad. La Necrosis Hepatopancreática Aguda (AHPND) es una enfermedad bacteriana que afecta a los estanques de granjas camaroneras y se presenta durante los primeros 30 días después de la siembra en estanques de camarones, causando una mortalidad del 70 - 100 %. La microbiota tiene un papel importante en la producción del camarón y el control de enfermedades. En el presente estudio, los genes pirA y pirB fueron amplificados por PCR para confirmar tanto organismos positivos como negativos a AHPND en hepatopáncreas de camarones. Posteriormente se secuenciaron las regiones hipervariables ribosómicas (ARNr) V3-V4 del gen 16S utilizando la plataforma MiSeq. Los resultados demostraron una microbiota diversa en el grupo negativo a AHPND, compuesto principalmente por filos Proteobacteria, Firmicutes y Actinobacteria. Además, Proteobacteria fue el filo dominante en el hepatopáncreas infectado con AHPND, mientras que Firmicutes tendió a disminuir. Vibrio fue el género más abundante, prevaleciendo sobre algunos géneros como Corynebacterium, Weissella, Lactobacillus, Photobacterium y Geobacillus. Los resultados sugieren que la enfermedad de AHPND causa disbiosis en la microbiota hepatopancreática, y el filo Firmicutes podría requerir ser restaurado en dicho escenario.

Abstract Introduction: Hermetia illucens is a fly found worldwide in tropical and temperate regions that feeds on decaying organic matter in its larval stage, which makes them useful to accelerate composing processes. Bacterial component on the larval guts that helps to degrade organic matter is well studied, however fungal communities information is more scarse, specially in tropical regions. Objective: To determine fungal communities in the gut of H. illucens larvae naturally occurring during urban composting processes in a tropical region. Methods: ITS sequencing was employed to characterize fungal communities present in H. illucens larval gut. Results: The analysis of amplicon sequence variants (ASVs) unveiled a notable dominance of Saccharomycetales, being yeasts of the genus Pichia the most abundant. Other relatively abundant yeasts were Candida and Galactomyces and the genus Archaeospora from Archaeosporales. The last two groups not being reported in H. illucens before. Conclusions: Yeasts of the genus Pichia are the most abundant group, this result is in concordance with previous studies which suggest a stable insect-yeast relation. The description of previously unreported fungal groups highlights the importance of continuing to explore the mycobiome dynamics of this larva. This study offers insight into the mycobiome of naturally occurring H. illucens larvae in a tropical region.

Resumen Introducción: Hermetia illucens se distribuye mundialmente en regiones tropicales y templadas. En su estado larval se alimenta de materia orgánica en descomposición, lo que las hace útiles para acelerar los procesos de compostaje. Se han realizado diversos estudios sobre el componente bacteriano de los intestinos de las larvas que ayuda a degradar la materia orgánica, sin embargo, información sobre las comunidades de microhongos es más escasa, especialmente en regiones tropicales. Objetivo: Determinar el micobioma presente en los intestinos de las larvas de H. illucens que se desarrollaron naturalmente en compostajes urbanos en una región tropical. Métodos: Se realizó secuenciación ITS para caracterizar las comunidades de microhongos presentes en el intestino de las larvas. Resultados: El análisis de variantes de secuencia de amplicones (ASV) reveló una notable dominancia de Saccharomycetales, siendo las levaduras del género Pichia las más abundantes. Otras levaduras relativamente abundantes fueron Candida y Galactomyces y el género Archaeospora de Archaeosporales. Los dos últimos grupos no han sido reportados previamente en H. illucens. Conclusión: Determinamos que las levaduras del género Pichia son el grupo más abundante. Este resultado concuerda con estudios previos, lo que sugiere una relación estable entre estos dos organismos. La descripción de grupos de hongos no reportados previamente resalta la importancia de continuar explorando la dinámica del micobioma de esta larva. Este estudio proporciona información sobre el micobioma de las larvas de H. illucens que se presentan naturalmente en una región tropical.

Abstract Within this academic research article, a bacterium isolated from a marine soil environment near the Mediterranean Sea is observed to possess the potential for producing various fatty acids, particularly n-caproic and oleic acids, as evidenced by FAME profiling. Furthermore, the introduction of glucose into the growth medium enhances the production of caprylic acid rather than caproic acid. The 16S rDNA sequencing suggested that the MZ1 strain belongs to Bacillus subtilis and is closely related to many halophilic species. FAME profiling reveals that the isolated MZ1 is competent in the total production of fatty acids compared to other marine bacterial candidates. Furthermore, the results indicate that MZ1 is efficient in the production of many other fatty acids. This exploration suggests that the marine bacterium Bacillus subtilis MZ1 can be used for fatty acids synthesis, which could be valuable for biodiesel production and other applications.

Resumen Dentro de este artículo de investigación académica, se observa que una bacteria aislada de un entorno de suelo marino cerca del mar Mediterráneo posee el potencial de producir diversos ácidos grasos, especialmente los ácidos n-caproico y oleico, según lo evidencia el perfil FAME. Además, la introducción de glucosa en el medio de crecimiento potencia la producción de ácido caprílico en lugar de ácido caproico. La secuenciación del 16S rDNA sugiere que la cepa MZ1 pertenece a Bacillus subtilis y está estrechamente relacionada con muchas especies halófilas. El perfil FAME revela que la cepa MZ1 aislada es competente en la producción total de ácidos grasos en comparación con otros candidatos bacterianos marinos. Además, los resultados indican que MZ1 es eficiente en la producción de muchos otros ácidos grasos. Esta exploración sugiere que la bacteria marina Bacillus subtilis MZ1 puede ser utilizada para la síntesis de ácidos grasos, lo cual podría ser valioso para la producción de biodiesel y otras aplicaciones.

Abstract: The main objective of this study is to characterize the virus associated with faba bean (Vicia faba L.) crops in the Department of Nariño (Colombia). Faba bean is an important food source, but it faces challenges from viral diseases such as "pod mottle." This disease manifests with symptoms such as leaf chlorosis, dwarfism, and pod lesions. Viral characterization is conducted through seed transmission tests, mechanical transmission, RT-PCR, and transmission electron microscopy (TEM). The results show that the virus morphology consists of spherical and enveloped particles that range between 80-100nm in diameter. RT-PCR and sequencing of the nucleocápside gen (558bp) reveals the virus is Orthotospovirus tomatomaculae (Tomato spotted wilt virus) with a 97% homology. Seed transmission is 2% while mechanical transmission is 40%. This is the first report of an Orthotospovirus affecting faba bean in Nariño, posing a risk to food security.

Resumen: El principal objetivo de este estudio es caracterizar el virus asociado al cultivo de haba (Vicia faba L.) en el Departamento de Nariño (Colombia). El cultivo de haba es una fuente importante de alimento, pero enfrenta desafíos por enfermedades virales como la "viruela de la vaina". Esta enfermedad se manifiesta con síntomas como clorosis en las hojas, enanismo y lesiones en la vaina. La caracterización del virus se realiza mediante pruebas de transmisión por semilla, transmisión mecánica, RT-PCR y microscopía electrónica de transmisión (TEM). Los resultados muestran que la morfología del virus consiste en partículas esféricas y envueltas de entre 80-100nm en diámetro. RT-PCR y secuenciación del gen nucleocápside (558pb) revela que el virus es Orthotospovirus tomatomaculae (Tomato spotted wilt virus) con una homología de 97%. La transmisión por semilla es de 2% y mecánicamente del 40%. Este es el primer informe de un Orthotospovirus afectando el haba en Nariño, lo que representa un riesgo para la seguridad alimentaria.

SUMMARY OBJECTIVE: The objective of this study was to analyze the genetic alterations of tumors within the scope of the homologous recombination deficiency gene panel in patients diagnosed with synchronous endometrial ovarian cancer who have been followed for over 5 years using next-generation sequencing. METHODS: DNA was isolated from the patient’s formalin-fixed, paraffin-embedded tissue blocks. Next-generation sequencing was performed using the Illumina capture-based sequencing method. Samples were sequenced using the Sophia HR Solution DNA Kit. RESULTS: Seven patients were included in this study. The ratios of likely pathogenic (LP)/pathogenic (P) somatic mutations in ATM (serine/threonine kinase or Ataxia-telangiectasia mutated gene), BRCA2 (breast cancer type 2 susceptibility gene), BARD1 (BRCA1 associated RING domain 1), TP53 (tumor protein p53), BIRP1 (BRCA1-interacting helicase 1 gene), PALB2 (partner and localizer of BRCA2), and CHECK2 were 21 (48.8%), 8 (18.6%), 5 (11.6%), 3 (6.9%), 2 (4.6%), 2 (4.6%), and 2 (4.6%), respectively, in endometrium, and the ratios of somatic mutations in ATM, BRCA2, TP53, BARD1, RAD54L (DNA repair/recombination protein like), BIRP1, and RAD51D (RAD51 recombinase paralog D) were 24 (60%), 6 (15%), 5 (12.5%), 2 (5%), 2 (5%), 1 (2.5%), and 1 (2.5%), respectively, in ovary. In endometrioid-synchronous endometrial ovarian cancer cases, P/LP mutations were observed in ATM and CHECK2 genes in endometrium and ATM, BRCA2, and TP53 genes in ovary. In two non-endometrioid-synchronous endometrial ovarian cancer cases, CHEK2 (checkpoint kinase 2) mutations were observed in endometrium and ATM and TP53 mutations in ovary, whereas in one case, P/LP mutations in ATM and TP53 genes were common in both tissues. CONCLUSION: Pathogenic variations confirming the diagnosis of synchronous endometrial ovarian cancer with genetic alterations were identified in all but one case. ATM gene mutation emerged as the most common alteration and has a potential association with a favorable prognosis. OBJECTIVE nextgeneration next generation METHODS patient s formalinfixed, formalinfixed formalin fixed, fixed formalin-fixed paraffinembedded paraffin embedded blocks Nextgeneration Next capturebased capture based method Kit RESULTS LP/pathogenic LPpathogenic LP /pathogenic P (P serine/threonine serinethreonine serine threonine Ataxiatelangiectasia Ataxia telangiectasia gene, , gene) BRCA breast BARD BRCA1 (BRCA 1, 1) TP TP5 tumor p53, p53 p p53) BIRP BRCA1interacting BRCAinteracting interacting PALB partner BRCA2) CHECK 48.8%, 488 48.8% 48 (48.8%) 18.6%, 186 18.6% 18 (18.6%) 11.6%, 116 11.6% 11 (11.6%) 6.9%, 69 6.9% 9 (6.9%) 4.6%, 46 4.6% 4 (4.6%) respectively RADL RAD L repairrecombination repair like, like like) RADD D RAD51 (RAD5 60%, 60 60% (60%) 15%, 15 15% (15%) 12.5%, 125 12.5% 12 (12.5%) 5%, 5% (5%) 2.5%, 25 2.5% (2.5%) ovary endometrioidsynchronous endometrioid cases PLP nonendometrioidsynchronous non CHEK checkpoint case tissues CONCLUSION prognosis p5 48.8 (48.8% 18.6 (18.6% 11.6 (11.6% 6.9 (6.9% 4.6 (4.6% RAD5 (RAD (60% (15% 12.5 (12.5% (5% 2.5 (2.5% 48. (48.8 18. (18.6 11. (11.6 6. (6.9 4. (4.6 (60 (15 12. (12.5 (5 2. (2.5 (48. (18. (11. (6. (4. (6 (1 (12. ( (2. (48 (18 (11 (4 (12 (2

The concept of digital transformation (DT) has revolutionized different facets of society including institutions of learning, where it has continued to influence teaching, learning and research. Over time and with the continued technological advancements in biological science disciplines, it has become clear that the increased convergence between these disciplines and digital systems application will become more apparent. For example, the advent and application of next-generation sequencing (NGS), machine learning (ML), artificial intelligence (AI) and other automated biological processes have afforded unique huge data sets with high societal impact. As such, digitalization of the bioeconomy remains necessary. The digitalization of the biosciences has birthed emerging concepts like "digital biology", "engineered biology" and "bio-revolution" and involve computer-centered biosciences. These are built around the integration of scientific data, modeling at several levels, as well as networked science. Nonetheless, it is still plagued by information derivation policies and technicality issues. Although, digital biology has seen a major boost in recent years with the emergence of new and updated digital biology databases and platforms for advanced computational modelling, and connection and visualization of bio-data at a molecular level, more efforts are needed from governmental stakeholders (policy makers), industry and academia to enhance the impact of computational automation and digital transformation in bioscience activities. Hence, a steady upscale in digitalization of the biosciences would ensure bioprocess development, increase teaching, research efficiency and productivity, birth more innovative future applications for various industries, and thereby impact several aspects of life. This article presents how selected biological science disciplines have been digitally transformed through data analytics and how the concept could be further explored in advancing teaching, learning and research.

ABSTRACT. Oreochromis niloticus is the most important aquacultural species worldwide. Several countries are interested in repopulating natural or artificial reservoirs with the fry of tilapia (Oreochromis sp.) to develop new fisheries or to enhance the existing ones. However, as tilapia is considered an invasive species, it is essential to check the existence of the species in the place before releasing any fry. Characterization of tilapia species with meristic is unreliable because of existing morphological similarities among species. In this work, the composition of the tilapia species of Laguna El Mastranzo (LEM), Nayarit, Mexico, was explored for the first time through a molecular method using the mitochondrial DNA control region. Three tilapia species (Oreochromis niloticus, O. aureus, and O. urolepis) were found in LEM, and it was confirmed that the two commercial strains (Aquamol and Spring) intended for repopulation were O. niloticus. Seven haplotypes of mitochondrial DNA control region sequences were obtained: three in LEM, three in Aquamol, and one in Spring strains. Before repopulating any reservoir, a molecular verification strategy is recommended to avoid spreading the species. The results of this work represent a glimpse into the genetic material of LEM, Nayarit, Mexico.

Resumen La mastitis bovina es una enfermedad que afecta a las ganaderías de pequeños y medianos productores de los cantones Cayambe y Pedro Moncayo, Provincia de Pichincha-Ecuador. El tratamiento de esta enfermedad resulta complicado debido a la variedad de microorganismos que la provocan. El presente estudio se enfocó en la determinación molecular por medio de reacción en cadena de la polimerasa (PCR) de los agentes etiológicos de la mastitis. Esta técnica presenta múltiples ventajas al reconocer familia, género y especie de microorganismos, y es un método capaz de detectar genes de resistencia de antibióticos, lo que resulta importante al momento de diagnosticar y tratar enfermedades. El objetivo de esta investigación se centró en la identificación de bacterias causantes de la mastitis bovina, utilizando pruebas bioquímicas y moleculares. Las pruebas bioquímicas como tinción Gram, Catalasa, Coagulasa, y Agar Manitol Sal fueron eficientes para obtener cepas puras y determinar el género de algunas bacterias. Se utilizaron primers específicos (RNA16S) para la identificación molecular de 9 agentes etiológicos causantes de la enfermedad en las unidades productivas. Los microorganismos encontrados fueron; Staphylococcus pasteuri, Staphylococcus warneri, Staphylococcus sp., Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus saprophyticus, Sphingomonas sp., Streptococcus dysgalactiae, Streptococcus uberis, la mayoría presentes en mastitis clínica. Para detectar genes de resistencia se utilizaron primers específicos, de los cuales 7 muestras presentaron el gen para resistencia a blaTEM (β-lactámicos) y 6 muestras presentaron el gen para resistencia a tetA (tetraciclinas). Se identificó multirresistencia en las especies: Staphylococcus pasteuri, Staphylococcus aureus, Staphylococcus epidermidis, Streptococcus uberis, Sphingomonas sp.

Abstract Bovine mastitis is a disease that affects the farms of small and medium producers in the cantons of Cayambe and Pedro Moncayo, Pichincha Province-Ecuador. Treating this disease is not easy due to the different microorganisms that cause it. This study focused on the molecular determination by means of polymerase chain reaction (PCR) of the etiological agents of mastitis, having multiple advantages when recognizing family, gender and species of microorganisms. It is a method capable of detecting resistance genes of antibiotics, an important analysis when diagnosing and treating diseases. The aim of this research is to identify bacteria causing bovine mastitis by using biochemical and molecular tests. Biochemical tests such as: Gram staining, Catalase, Coagulase, and Mannitol Salt Agar were efficient to obtain pure strains and determine the gender of some bacteria. Specific primers (RNA16S) were used for the molecular identification of 9 etiological agents causing the disease in the productive units. The microorganisms found were Staphylococcus pasteuri, Staphylococcus warneri, Staphylococcus sp., Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus saprophyticus, Sphingomonas sp., Streptococcus dysgalactiae, Streptococcus uberis, mostly present in clinic mastitis. To detect resistance genes, specific primers were used, of which 7 samples presented the gene for resistance to blaTEM (β-lactam) and 6 samples presented the gene for resistance to tetA (tetracyclines). Multi-resistance was identified in the species Staphylococcus pasteuri, Staphylococcus aureus, Staphylococcus epidermidis, Streptococcus uberis, Sphingomonas sp.

Resumen Presentamos un paciente con una rara enfermedad autoinflamatoria sistémica (deficiencia de mevalonato quinasa -DMQ-) con la identificación de dos variantes heterocigotas (c.1129G>A y c.32C>T) en el gen Meval onato Quinasa, detectadas por secuenciación masiva en paralelo y una glomerulonefritis de alta prevalencia (nefropatía por IgA). El paciente presentó un cuadro de fiebre periódica recurrente mensual desde los 12 días de vida, acompañada de lesiones mucocutáneas (rash maculopapular en extremidades, estomatitis aftosa), compromiso articular (artralgias en tobillos, muñecas y rodillas), linfoideo (linfoadenopatía cervical, esplenome galia), gastrointestinal (diarrea, dolor abdominal) y renal (hematuria y proteinuria) con repetidas biospias most rando nefropatía por IgA alternando actividad y cronic idad. Durante el seguimiento, tuvo una pobre respuesta terapéutica a múltiples esquemas inmunosupresores utilizados durante 7 años (corticoides, azatrioprina, micofenolato, ciclofosfamida, rituximab y tocilizumab), y buena respuesta finalmente a canakinumab. Cuatro años posteriores al inicio de canakinumab, durante el curso de una infección por un absceso muscular, el cuadro clínico se complica con un evento microvascular renal grave (necrosis cortical renal -NCR-) con fallo renal agudo y necesidad de diálisis. Los episodios recurrentes de inflamación por la DMQ podrían actuar como gatil los para la reactivación de su glomerulonefritis (lo que explicaría la escasa respuesta a inmunosupresores y la progresión rápida a cronicidad histológica) y para gen erar un microambiente que predisponga el desarrollo de una NCR ante una infección no grave. En la DMQ se ha descripto un defecto en las moléculas de IgA, fenómeno también observado en la nefropatía por IgA. Esto plantea la desafiante hipótesis de un vínculo patogénico común entre todas las manifestaciones clínicas del paciente.

Abstract We present a patient with a rare systemic autoinflam matory disease (mevalonate kinase deficiency -MKD-) with the identification of two heterozygous variants (c.1129G>A and c.32C>T) in the Mevalonate Kinase gene, detected by next generation sequencing and a highly prevalent glomerulonephritis (IgA nephropathy). The patient presents clinically with a monthly recurrent periodic fever from 12 days of age, accompanied by mucocutaneous lesions (maculopapular rash in ex tremities, aphthous stomatitis), joint (arthralgias in ankles, wrists and knees), lymphoid (cervical lymph adenopathy, splenomegaly), gastrointestinal (diarrhea, abdominal pain) and kidney (hematuria and protei-nuria) with repeated biopsies showing IgA nephropathy alternating activity with chronicity. During follow-up. The patients presented a poor therapeutic response to multiple immunosuppressive regimens used for 7 years (corticosteroids, azathioprine, mycophenolate, cyclo phosphamide, rituximab and tocilizumab), and finally a good response to canakinumab. Four years after starting canakinumab, during the course of an infection due to a muscle abscess, the clinical presentation is complicated by a severe renal microvascular event (renal cortical necrosis -RCN-) with acute kidney injury and dialysis requirement. Therecurrent episodes of inflammation due to MKD could act as triggers for the reactivation of glomerulonephritis (which would explain the poor response to immunosuppressants and the rapid pro gression to histological chronicity) and to generate a microenvironment that predisposes the development of RCN in the face of a non-serious infection. A defect in IgA molecules has been described in MKD, a phenom enon also observed in IgA nephropathy. This raises the challenging hypothesis of a common pathogenetic link between all the patient’s clinical manifestations.

RESUMEN: La mareína es un compuesto flavonoide que reduce la glucosa y los lípidos en sangre y tiene un efecto protector en la diabetes. Sin embargo, no se han dilucidado el efecto y los mecanismos de la mareína sobre la transición endotelial- mesenquimatosa renal en la enfermedad renal diabética (ERD). En este estudio, los datos de secuenciación unicelular sobre DKD se analizaron utilizando un método de bioinformación y los datos se sometieron a una agrupación de dimensiones reducidas. Se descubrió que las células endoteliales podían dividirse en cinco subgrupos. La secuencia de desarrollo de los subgrupos fue 0, 1, 4, 2 y 3, de los cuales el subgrupo 3 tenía el fenotipo más intersticial. La expresión de la proteína marcadora mesenquimatosa: vimentina (VIM), fibronectina (FN1) y receptor del factor de crecimiento de fibroblastos. 1 (FGFR1) aumentó con la conversión de subgrupos. En ratones db/db de 13 a 14 semanas de edad, que desarrollan complicaciones de DKD después de las 8 a 12 semanas de edad, la mareína redujo los niveles sanguíneos de glucosa, creatinina y nitrógeno ureico, mejoró el daño estructural en el tejido renal y redujo la deposición y expresión de colágeno de FN1 y VIM. Marein también aumentó el marcador de autofagia: Cadena ligera 3II/I (LC3II/I) y disminuyó la expresión de FGFR1 en el tejido renal. En un modelo de transición endotelial-mesenquimal, un nivel alto de glucosa indujo un cambio fenotípico en las células endoteliales de la vena umbilical humana. Marein disminuyó la migración de células endoteliales, mejoró la morfología de las células endoteliales y disminuyó la expresión de VIM y FN1. El uso del inhibidor de FGFR1, AZD4547, y del inhibidor de la autofagia, 3-metiladenina (3-MA), demostró aún más el efecto inhibidor de la mareína en la transición endotelial-mesenquimal inducida por niveles altos de glucosa al reducir la expresión de FGFR1 y regular positivamente la proteína marcadora de autofagia. , LC3II/I. En conclusión, este estudio sugiere que la mareína tiene un efecto protector sobre la transición endotelial-mesenquimatosa renal en la ERC, que puede estar mediada por la inducción de autofagia y la regulación negativa de la expresión de FGFR1.

SUMMARY: Marein is a flavonoid compound that reduces blood glucose and lipids and has a protective effect in diabetes. However, the effect and mechanism(s) of marein on renal endothelial-mesenchymal transition in diabetic kidney disease (DKD) have not been elucidated. In this study, single-cell sequencing data on DKD were analyzed using a bioinformation method, and the data underwent reduced dimension clustering. It was found that endothelial cells could be divided into five subclusters. The developmental sequence of the subclusters was 0, 1, 4, 2, and 3, of which subcluster 3 had the most interstitial phenotype.The expression of mesenchymal marker protein:Vimentin(VIM), Fibronectin(FN1), and fibroblast growth factor receptor 1 (FGFR1) increased with the conversion of subclusters. In db/db mice aged 13-14 weeks, which develop DKD complications after 8-12 weeks of age, marein reduced blood levels of glucose, creatinine, and urea nitrogen, improved structural damage in kidney tissue, and reduced collagen deposition and the expression of FN1 and VIM. Marein also up-regulated autophagy marker:Light chain 3II/I(LC3II/I) and decreased FGFR1 expression in renal tissue. In an endothelial-mesenchymal transition model, a high glucose level induced a phenotypic change in human umbilical vein endothelial cells. Marein decreased endothelial cell migration, improved endothelial cell morphology, and decreased the expression of VIM and FN1. The use of the FGFR1 inhibitor, AZD4547, and autophagy inhibitor, 3-Methyladenine(3-MA), further demonstrated the inhibitory effect of marein on high glucose-induced endothelial-mesenchymal transition by reducing FGFR1 expression and up-regulating the autophagy marker protein, LC3II/I. In conclusion, this study suggests that marein has a protective effect on renal endothelial- mesenchymal transition in DKD, which may be mediated by inducing autophagy and down-regulating FGFR1 expression.

ABSTRACT: Members of the genus Lanius, known as shrikes, are economically important song birds distributed widely in several Asian countries. DNA sequencing, based on a partial segment of the cytochrome oxidase b (Cyt b) gene, was used to determine genetic variations and population genetic structure in four populations of shrike samples from north, east, and west Pakistan. We observed nucleotide diversities in L. isabellinus(= 0.02), L. schach(= 0.005), L. vittatus(= 0.004) and L. lahtora(= 0.008) . FST values were significant (P < 0.05) in all species populations apart from L. isabellinus, which were non-significant. The negative values of Fu’s Fs and Tajima’s D showed significant population expansion in three species, L. schach, L. vittatusand L. Lahtora, whereas they were insignificant in populations of L. isabellinus. Fu’s Fs and Tajima’s D values explain that a strong genetic structure is present among members of L. isabellinus. On this basis, it is inferred that strong genetic structuring in L. isabellinuspopulations within this region was largely shaped by a common origin, with secondary influences from geographical factors and isolation. ABSTRACT Lanius shrikes countries sequencing Cyt gene north east Pakistan L isabellinus= isabellinus = isabellinus( 0.02, 002 0.02 , 0 02 0.02) schach= schach schach( 0.005, 0005 0.005 005 0.005) vittatus= vittatus vittatus( 0.004 0004 004 lahtora= lahtora lahtora( 0.008 0008 008 P 0.05 05 nonsignificant. nonsignificant non significant. non-significant Fus Fu s Tajimas Tajima Lahtora basis origin isolation 00 0.0 000 0.00 0.

RESUMO: Membros do gênero Lanius, conhecidos como picanços, são pássaros canoros economicamente importantes, amplamente distribuídos em vários países asiáticos. O sequenciamento de DNA, baseado em um segmento parcial do gene citocromo oxidase b (Cyt b), foi usado para determinar as variações genéticas e a estrutura genética da população em quatro populações de amostras de picanço do norte, leste e oeste do Paquistão. As diversidades de nucleotídeos em L. isabellinus (= 0,02), L. schach (= 0,005), L. vittatus (= 0,004) e L. lahtora (= 0,008) foram observadas. Os valores de FST foram significativos (P < 0,05) em todas as populações de espécies, exceto L. isabellinus, que não foram significativos. Os valores negativos de Fs de Fu e D de Tajima mostraram expansão populacional significativa em três espécies, L. schach, L. vittatus e L. Lahtora, enquanto foram insignificantes em populações de L. isabellinus. Os valores Fs de Fu e D de Tajima explicam que uma forte estrutura genética está presente entre os membros de L. isabellinus. Com base nisso, infere-se que a forte estruturação genética nas populações de L. isabellinus nessa região foi amplamente moldada por uma origem comum, com influências secundárias de fatores geográficos e isolamento. RESUMO Lanius picanços importantes asiáticos DNA Cyt b, , b) norte Paquistão L = ( 0,02, 002 0,02 0 02 0,02) 0,005, 0005 0,005 005 0,005) 0,004 0004 004 0,008 0008 008 observadas P 0,05 05 espécies Lahtora nisso inferese infere se comum isolamento 00 0,0 000 0,00 0,