ABSTRACT The primates that inhabit the rainforest surrounding the city of Manaus (Amazonas, Brazil) have long been recognised as potentially important reservoirs of emerging and re-emerging infectious diseases (ERIDs). PCR amplification of filarial sequences from wild-caught Simulium oyapockense has been used to incriminate potentially important Amazon-region ERID bridge vectors by showing they had previously fed on non-human primates. The broader use of filarial parasite sequences for the incrimination of biting insects as potentially important zoonotic disease vectors is limited by a paucity of primate-derived filarial parasite reference sequences which can be matched to the PCR amplified sequences obtained from insect-vector vectors. Here we have used shotgun sequencing to obtain reference data from an adult Dipetalonema gracile parasite which was found infecting a wild pied tamarin (Saguinus bicolor) in a peripheral region of Manaus. We report the parasite´s complete mitochondrial genome (which is 13,647 base pairs in length), 894,846 base pairs of its Wolbachia genome and 6,426 base pairs of its ribosomal DNA locus (spanning from the start of its 18S subunit to the end of its 28S subunit). Despite being critically endangered, S. bicolor is commonly encountered around the periphery of Manaus and in urban forest fragments. The reported sequences may be a useful reference tool for identifying ERID bridge vectors and potentially provide some insights into the amount and the nature of contact between primate pathogen reservoirs and the residents of Manaus.

RESUMO Os primatas que habitam a floresta tropical ao redor da cidade de Manaus (Amazonas, Brasil) há muito são reconhecidos como reservatórios potencialmente importantes de doenças infecciosas emergentes e reemergentes. Sequências de DNA de parasitas filariais detectadas por PCR em amostras de Simulium oyapockense foram usadas para demonstrar que eles haviam se alimentado anteriormente de primatas não humanos e, dessa maneira, incriminar vetores-ponte da região amazônica. O uso mais amplo de detecção de parasitas filariais para a incriminação de vetores-ponte é limitado por uma escassez de sequências referência de parasitas filarias obtidas de hospedeiros. Aqui nós usamos o sequenciamento tipo shotgun para obter dados de referência de um parasita adulto Dipetalonema gracile encontrado infectando um sauim-de-coleira, Saguinus bicolor no entorno de Manaus. Relatamos o genoma mitocondrial completo do parasita (que tem 13.647 pares de bases de comprimento), 894.846 pares de bases de seu genoma de Wolbachia e 6.426 pares de bases de seu locus de DNA ribossômico (desde o início de sua subunidade 18S até o final de sua subunidade 28S). Apesar de criticamente ameaçado, S. bicolor é comumente encontrado no entorno de Manaus e em fragmentos florestais urbanos. As sequências relatadas podem ser uma ferramenta de referência útil para identificar vetores ponte e potencialmente fornecer algumas informações sobre o contato entre reservatórios de patógenos de primatas e os moradores de Manaus.

Abstract The canine filarial parasite Dirofilaria immitis has not been reported in Brazil´s Amazonas state capital, Manaus, for over a century. Here, we report one imported and 27 autochthonous D. immitis infections from a microfilarial survey of 766 domestic dog blood samples collected between 2017 and 2021 in Manaus. An Overall prevalence estimate of 15.44% (23/149) was calculated from our two rural collection sites; a prevalence of 1.22% (4/328) was estimated at our periurban collection site, and an overall prevalence of 0.35% (1/289) was calculated from our two urban clinic collections. Our data suggest that in the urban areas of Manaus, where the parasites are very likely vectored by the same species of mosquito that historically vectored Wuchereria bancrofti (Culex quinquefasciatus), prevalence levels are very low and possibly maintained by an influx from rural areas where sylvatic reservoirs and/or more favorable vector transmission dynamics maintain high prevalences.

Resumo O parasita filarial canino, Dirofilaria immitis, causa doença zoonótica, mas não tem sido registrado em Manaus, capital do estado do Amazonas, há mais de um século. Neste trabalho, foi relatado uma infecção por D. immitis alóctone e 27 autóctones de um levantamento de microfilárias em 766 amostras de sangue em cães domésticos, coletados entre 2017 e 2021 em Manaus. A prevalência de 15,44% (23/149) foi estabelecida em áreas rurais, 1,22% (4/328) para áreas periurbanas e de 0,35% (1/289) para duas clínicas veterinárias localizadas na zona urbana da cidade. Estes dados sugerem, portanto, que nas áreas urbanas de Manaus, nas quais o parasita é provavelmente vetorizado pela mesma espécie de mosquito que, historicamente, transmitiu Wuchereria bancrofti (Culex quinquefasciatus). Também os níveis de prevalência são baixos e, possivelmente, mantidos por um influxo de áreas rurais onde reservatórios silvestres e/ou dinâmicas de transmissão vetorial mais favoráveis mantêm uma prevalência mais elevada.

Abstract Anthropogenic disturbances affecting forest areas can increase disease prevalence and susceptibility in several species of arboreal mammals, such as sloths. Thus, this study aimed to evaluate the most common conditions in body systems of free-ranging sloths admitted at the Wildlife Triage and Rehabilitation Center of Amazonas of the Institute of Environment and Renewable Natural Resources. A total of 227 individuals (139 retrospective cases from 2015 to 2019, and 88 prospective cases from July 2020 to July 2021) were evaluated over a six-year period. Cases from the genus Bradypus showed involvement of the following body systems: 44% respiratory, 29% integumentary, 15% musculoskeletal, 5% digestive, 3% visual, 2% auditory, 1% circulatory and 1% genitourinary, while that distribution in the genus Choloepus was: 39% musculoskeletal, 27% integumentary, 19% respiratory, 9% digestive, 3% circulatory, 1% visual, 1% auditory and 1% genitourinary. The results reveal significant differences between the condition detected and the genus (Bradypus and Choloepus), age and case outcome. These results can provide data for future investigations of sloth diseases, confirming lesions, as well as motivating and suggesting adequate management methods.

Resumo Distúrbios antrópicos que afetam áreas florestais podem aumentar a prevalência de afecções e a suscetibilidade às doenças em diversas espécies de mamíferos arborícolas, como as preguiças. Desta forma, este estudo teve como objetivo avaliar as condições mais comuns nos sistemas orgânicos de preguiças de vida livre admitidas no Centro de Triagem e Reabilitação de Animais Silvestres do Amazonas. Um total de 227 indivíduos (139 casos retrospectivos de 2015 a 2019 e 88 casos prospectivos de julho de 2020 a julho de 2021) foram avaliados durante um período de seis anos. Para o gênero Bradypus foram diagnosticadas 44% de afecções do sistema respiratório, 29% tegumentar, 15% musculoesquelético, 5% digestório, 3% visual, 2% auditivo, 1% circulatório e 1% genitourinário. Por sua vez, para o gênero Choloepus foram detectadas 39% de afecções do sistema musculoesquelético, 27% tegumentar, 19% do sistema respiratório, 19% do sistema respiratório, 9% digestório, 3% circulatório, 1% visual, 1% auditivo e 1% genitourinário. Os resultados mostraram diferenças significativas na prevalência da afecção e gênero das preguiças (Bradypus e Choloepus), a faixa etária e desfecho do caso. Esses resultados podem fornecer subsídios para investigar as doenças de preguiças, confirmando afecções, motivo e sugerir métodos adequados de manejo.

BACKGROUND The parasite Giardia duodenalis infects a wide range of vertebrate hosts, including domestic and wild animals as well as humans. Giardia is genotyped into eight assemblages (A-H). Zoonotic assemblages A and B have already been identified in humans and wild and domestic animals (non-human primates and cats) from Brazilian Amazon and in the world. Due to its zoonotic/zooanthroponotic nature, surveillance initiatives and the definition of Giardia assemblages are important in order to characterise the epidemiological scenario and to implement further control measures. OBJECTIVES Determine assemblages of G. duodenalis in sloths from the Brazilian Amazon Region. METHODS Faecal parasitological examination of sloths from Amazonas State. Polymerase chain reaction (PCR) targeting the beta giardin (BG), and genes from multilocus sequence typing (MLST) scheme, amplicon sequencing and phylogenetic analysis. FINDINGS Here, we identified, by microscopy, Giardia in two northern sloths (Bradypus tridactylus). These two samples were submitted to molecular assays and it was revealed that both were infected by G. duodenalis assemblage A. Phylogenetic analysis showed that they belong to assemblage A within sequences from humans and wild and domestic animals. CONCLUSION Therefore, besides showing, by the first time, the current presence of this parasite in sloths, our findings reveals that this wild animal species would be part of the zoonotic/zooanthroponotic scenario of this parasite in the Brazilian Amazon.

Abstract In this article, we explore elements that highlight the interdependent nature of demands for knowledge production and decision-making related to the appearance of emerging diseases. To this end, we refer to scientific production and current contextual evidence to verify situations mainly related to the Brazilian Amazon, which suffers systematic disturbances and is characterized as a possible source of pathogenic microorganisms. With the acceleration of the Anthropocene's environmental changes, socio-ecological instabilities and the possibility of the emergence of infectious diseases merge into a background of a ´twin insurgency´. Furthermore, there is a tendency to impose economic hegemony in the current Brazilian context, corroborating discourses and pressures to a scientific simplification and denial. With this, we assert that developmental sectoral actions and monoculture of knowledge characterize an agenda of omission, that is, a process of decision making that indirectly reinforces ecological degradation and carelessness in the face of the possibility of the emergence and spreading of new diseases, such as COVID-19. Tackling the socio-ecological complexity inherent in the risk of the emergence of infectious diseases requires robust co-construction of scientific knowledge, eco-social approaches, and corresponding governance and sophisticated decision-making arrangements.

BACKGROUND Giardia duodenalis is a protozoan parasite that infects humans and other mammals and causes giardiasis worldwide. Giardia is genotyped into eight assemblages (A-H), with assemblages A and B considered zoonotic. OBJECTIVES The aim of this study was to determine the assemblages of G. duodenalis from individuals living in rural and urban areas of the Amazonas State. METHODS 103 human faecal specimens microscopically positive for the presence of Giardia obtained from four municipalities in Amazonas and four animal faecal specimens were genotyped based on the sequences of two genes, triosephosphate isomerase (TPI) and β-giardin (BG). FINDINGS In humans, assemblage A was the most represented with the identification of sub-assemblages AI, AII and AIII based on BG and sub-assemblages AI and AII based on TPI. Similarly, there is a diversity of sub-assemblage B considering BG (B and BIII) and TPI (B, BIII and BIV). In addition, we characterised homogeneous and heterogeneous genotypes comprising assemblages/sub-assemblages A and B in individuals from urban and rural areas. Here, for the first time, it was genotyped Giardia that infects animals from the Brazilian Amazon region. We identified sub-assemblage AI in one Ateles paniscus and two Felis catus and sub-assemblage BIV in one Lagothrix cana. MAIN CONCLUSIONS Therefore, humans and animals from the urban and rural Amazon share Giardia genotypes belonging to assemblages A and B, which are found in cosmopolitan regions around the world.

BACKGROUND Trypanosomatids are widespread and cause diseases - such as trypanosomiasis, sleeping sickness, Chagas disease, and cutaneous and visceral leishmaniasis - in animals and humans. These diseases occur in both rural and urban regions due to unplanned growth and deforestation. Thus, wild and synanthropic reservoir hosts living in residential areas are risk factors. OBJECTIVE We aimed to evaluate the diversity of small mammals (rodents and marsupials), and the occurrence of trypanosomatids, especially Leishmania, in the rural settlement of Presidente Figueiredo, Amazonas. METHODS Animals were collected using Sherman, Tomahawk, and Pitfall traps along 16 trails in four landscapes: continuous forest, forest with planting, planting, and peridomiciliar. Leishmania sp. was detected in liver samples by polymerase chain reaction targeting kDNA. FINDINGS Diversity was higher in forests with planting and lower around residences. In total, 135 mammals (81 rodents and 54 marsupials covering 14 genera) were captured. Rodents presented infection rates (IR) of 74% and marsupials of 48%. Rodents in domicile landscapes presented a higher IR (92.9%), while marsupials showed a higher IR in forests (53.3%). MAIN CONCLUSIONS The results suggest high prevalence of trypanosomatids across 12 mammalian genera possibly involved as reservoir hosts in the enzootic transmission of leishmaniasis in the Amazon’s rural, peridomiciliar landscape.

Resumo O Parque Estadual Morro do diabo (PEMD) é um significante remanescente de Mata Atlântica no Brasil, e rodeado de propriedades rurais. Nesta área humanos, animais domésticos e silvestres vivem próximos, o que facilita o fluxo de agentes infecciosas entre eles. Nós avaliamos a presença de endoparasitas, por meio de exame coproparasitológico dos animais domésticos de todas as propriedades rurais do entorno do PEMD. Foram amostrados 197 bovinos, 37 equinos, 11 ovinos, 25 suínos, 62 grupos de galinhas, 22 cães e 1 gato, residentes em 10 grandes propriedades privadas e 75 assentamentos rurais. Eimeria spp. estava presente em quase todas as espécies hospedeiras, com excessão de equinos, cães e gatos. Cistos de Giardia estavam presentes somente em bovinos. Nematodes foram encontrados em suínos, ruminantes e equinos em alta prevalência. Ancylostoma, Toxocara e Sarcocystis foram encontrados em cães. Galinhas foram encontradas com coccidia, Ascaridida e Capillaria spp.. Os parasitas encontrados podem causar má nutrição e problemas reprodutivos para seus hospedeiros. Medidas de prevenção e controle da dispersão de endoparasitas podem melhorar a condição de saúde pública, animal e ambiental nesta área.

Abstract Morro do Diabo State Park (MDSP) is a significant remnant of the Atlantic Rain Forest in Brazil and is surrounded by rural properties. In that area, wild and domestic animals and humans are in close contact, which facilitates the two-way flow of infectious diseases among them. We assessed endoparasites in domestic livestock from all rural properties surrounding MDSP. There were sampled 197 cattle, 37 horses, 11 sheep, 25 swine, 21 dogs, one cat and 62 groups of chickens from 10 large private properties and 75 rural settlements. Eimeria spp. was present in almost all hosts, excepted in horses, dogs and cats. Giardia cysts were present only in cattle. Nematodes were found in swine, ruminants and horses in high prevalence. Ancylostoma, Toxocara and Sarcocystis were found in dogs. Chickens were found with coccidia, Ascaridida and Capillaria spp.. These parasites can cause malnutrition and reproductive disorders for their hosts. Strategies to prevent and control the spread of endoparasites can improve wildlife, animal and human health in this area.

Este artigo expressa – por meio de um ensaio fotográfico em um projeto fotográfico de criação coletivo e interdisciplinar – a busca por captar Rio Pardo, uma comunidade rural amazônica. Metodologicamente, a proposta evitou um roteiro preestabelecido – baseando-se na noção de ensaísmo. Entre outros elementos, o trabalho foi executado, no geral, por fotógrafos de variadas formações acadêmicas, um caminho desafiador na intenção de apresentar a visão dos comunitários e evitar que as imagens fossem tratadas com menor importância em relação às ideias. Na etapa final, disporíamos de um emaranhado instigante de rotas-imagens para pavimentar nossa narrativa em conjunto.

This paper, which includes a photo essay as part of an interdisciplinary photographic project that was collectively created, is the expression of attempts to gather insights about Rio Pardo, a rural Amazonian community. The method proposed sought to avoid any predetermined script and was based on the notion of essay writing. Among its various components, the work was mainly carried out by photographers from different academic backgrounds, a route that was challenging but that aimed to present a vision of communities and avoid a situation in which the images would be considered less important than ideas. In the final phase, we had at our disposal an inspiring patchwork of route-images that together paved our narrative.

Este artículo expresa, por medio de un ensayo fotográfico en un proyecto fotográfico de creación colectiva e interdisciplinaria, la búsqueda por captar Rio Pardo, una comunidad rural amazónica. Metodológicamente, la propuesta evitó un itinerario preestablecido – basándose en la noción de ensayismo. Entre otros elementos, el trabajo fue ejecutado, en general, por fotógrafos de diversas formaciones académicas, un camino desafiador con la intención de presentar la visión de los comunitarios y evitar que las imágenes fuesen tratadas con menor importancia en relación a las ideas. En la etapa final, dispondremos de un enmarañado instigador de rutas-imágenes para pavimentar nuestra narrativa en conjunto.

Este artigo expressa – por meio de um ensaio fotográfico em um projeto fotográfico de criação coletivo e interdisciplinar – a busca por captar Rio Pardo, uma comunidade rural amazônica. Metodologicamente, a proposta evitou um roteiro preestabelecido – baseando-se na noção de ensaísmo. Entre outros elementos, o trabalho foi executado, no geral, por fotógrafos de variadas formações acadêmicas, um caminho desafiador na intenção de apresentar a visão dos comunitários e evitar que as imagens fossem tratadas com menor importância em relação às ideias. Na etapa final, disporíamos de um emaranhado instigante de rotas-imagens para pavimentar nossa narrativa em conjunto.

This paper, which includes a photo essay as part of an interdisciplinary photographic project that was collectively created, is the expression of attempts to gather insights about Rio Pardo, a rural Amazonian community. The method proposed sought to avoid any predetermined script and was based on the notion of essay writing. Among its various components, the work was mainly carried out by photographers from different academic backgrounds, a route that was challenging but that aimed to present a vision of communities and avoid a situation in which the images would be considered less important than ideas. In the final phase, we had at our disposal an inspiring patchwork of route-images that together paved our narrative.

Este artículo expresa, por medio de un ensayo fotográfico en un proyecto fotográfico de creación colectiva e interdisciplinaria, la búsqueda por captar Rio Pardo, una comunidad rural amazónica. Metodológicamente, la propuesta evitó un itinerario preestablecido – basándose en la noción de ensayismo. Entre otros elementos, el trabajo fue ejecutado, en general, por fotógrafos de diversas formaciones académicas, un camino desafiador con la intención de presentar la visión de los comunitarios y evitar que las imágenes fuesen tratadas con menor importancia en relación a las ideas. En la etapa final, dispondremos de un enmarañado instigador de rutas-imágenes para pavimentar nuestra narrativa en conjunto.

O objetivo deste estudo foi avaliar a ocorrência de Cryptosporidium, em animais domésticos de propriedades rurais ao redor de fragmentos de mata Atlântica de interior no município de Teodoro Sampaio, por exame convencional de flutuação em solução de sacarose, seguido de caracterização molecular dos parasitas através do sequenciamento dos produtos amplificados na PCR do gene SSU rRNA. Foram coletadas amostras fecais de animais domésticos criados para subsistência e estimação nas propriedades rurais do entorno de três fragmentos florestais. Amostras de bovinos (197), equinos (63), suínos (25), ovinos (11) e cães (28) foram coletadas de 98 propriedades rurais. A ocorrência de Cryptosporidium para a espécie bovina foi de 3,0% (6/197); para os cães, de 10,7% (3/28); e para os demais animais os resultados foram negativos. Todas as sequências obtidas das seis amostras de bovinos apresentaram identidade molecular com Cryptosporidium andersoni, enquanto as sequências oriundas de amostras de fezes de cães revelaram-se similares ao C. canis. A ocorrência do Cryptosporidium entre os animais estudados foi baixa. Diante dos resultados do presente estudo, o ciclo zoonótico da criptosporidiose parece ter menos importância nesta região. A presença de espécies de Cryptosporidium ainda pouco relatadas em humanos pode ser, por outro lado, importante para a fauna silvestre, uma vez que estes animais podem ser considerados como uma fonte de infecção e disseminação deste protozoário. O impacto e a magnitude da infecção de C. andersoni, em ruminantes selvagens, e de C. canis, em cães silvestres, deve ser avaliado em estudos futuros, com intuito de verificar a real importância dessas espécies nesta região.

The aim of this study was to assess the occurrence of Cryptosporidium in domestic animals in rural properties surrounding rain forest fragments within the municipality of Teodoro Sampaio, southeastern Brazil. Conventional sucrose flotation method followed by molecular characterization of the parasites by sequencing PCR products amplified from SSU rRNA gene were used. Stool samples were collected from domestic animals raised as pets and livestock in all rural properties surrounding three forest fragments. Samples from cattle (197), equine (63), pigs (25), sheep (11), and dogs (28) were collected from 98 rural properties. The frequency of occurrence of Cryptosporidium within each animal species was 3.0% (6/197) among cattle and 10.7% (3/28) among dogs. Cryptosporidium was not detected in stool samples from equine, sheep, and pigs. All sequences obtained from the six samples of calves showed molecular identity with Cryptosporidium andersoni while all sequences from dog samples were similar to C. canis. The frequency of occurrence of Cryptosporidium in these domestic animal species was low. The absence of C. parvum in the present study suggests that the zoonotic cycle of cryptosporidiosis may not be relevant in the region studied. The presence of Cryptosporidium species seldom described in humans may be, otherwise, important for the wild fauna as these animals are a source of infection and dissemination of this protozoan to other animal species. The impact and magnitude of infection by C. andersoni in wild ruminants and C. canis in wild canids have to be assessed in future studies to better understand the actual importance of these species in this region.